Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_E10_e365_10.seq
(1547 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560... 53 7e-07
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 52 9e-07
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 50 4e-06
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 49 9e-06
02_05_0261 + 27243898-27243938,27244068-27244157,27244293-272443... 48 2e-05
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 46 1e-04
04_04_0814 + 28266590-28266615,28266780-28266860,28266986-282670... 44 3e-04
01_06_0175 + 27229878-27230056,27231102-27231159,27231230-272312... 37 0.037
08_02_1378 + 26536082-26537803 35 0.20
09_06_0148 - 21214460-21214561,21214993-21215339,21215428-212155... 33 0.80
02_02_0113 + 6914562-6915260 31 3.2
>09_06_0203 +
21555747-21555805,21555862-21555939,21556034-21556091,
21556191-21556235,21556514-21556549,21556855-21556935,
21557016-21557087,21557184-21557195
Length = 146
Score = 52.8 bits (121), Expect = 7e-07
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +3
Query: 135 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMKD 290
K K +KPKRP SA+ +++ R+ K +HP +K V+ I K GG+ WKSM D
Sbjct: 27 KAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKWKSMTD 79
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 52.4 bits (120), Expect = 9e-07
Identities = 23/47 (48%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Frame = +3
Query: 156 KPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMKDK 293
K KRP +A+ L+++ R++ K+EHP K V+ +AK+GGE WKSM D+
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDE 137
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 50.4 bits (115), Expect = 4e-06
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +3
Query: 135 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWXX 308
KK K + PKR M+ +M + + R +K+ +P L TEIAKK GEMW+ M ++K +
Sbjct: 591 KKKKDPNAPKRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKMTGEEKQPYIQ 650
Query: 309 XXXXXXXQYAKDLESY 356
+Y K+ Y
Sbjct: 651 QSQVDKKRYEKESAVY 666
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 49.2 bits (112), Expect = 9e-06
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = +3
Query: 135 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWXX 308
KK K + PKR ++ +M + + R +K+ +P L TEIAKK GE W+ M ++K +
Sbjct: 550 KKKKDPNAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKMTAEEKQPYVE 609
Query: 309 XXXXXXXQYAKDLESY 356
+YA++ +Y
Sbjct: 610 QSQVDKKRYAEESAAY 625
>02_05_0261 +
27243898-27243938,27244068-27244157,27244293-27244350,
27244441-27244485,27244778-27244855,27244940-27245041,
27245150-27245173
Length = 145
Score = 48.0 bits (109), Expect = 2e-05
Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Frame = +3
Query: 132 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMKDK 293
RKK + KPKRP SA+ ++++ R++ ++ HP K V ++K GE W++M ++
Sbjct: 24 RKKAAASGKPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSEQ 78
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 45.6 bits (103), Expect = 1e-04
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +3
Query: 153 DKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWXXXXXXXX 326
++PK+P S+++L+ AR Q+ E PG+ + + WK + +K W
Sbjct: 412 NRPKKPASSFLLFSKEARRQLAEERPGVASSTLTALVSVKWKELGEAEKQAWNGKAAEAM 471
Query: 327 XQYAKDLESY 356
Y +D+E Y
Sbjct: 472 AAYKRDMEEY 481
Score = 43.2 bits (97), Expect = 6e-04
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +3
Query: 132 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMK--DKSIWX 305
+KK K KPK+PMSAY ++ R + +E V EI + GE WK+M +K+ +
Sbjct: 276 KKKEKDPSKPKQPMSAYFVYTQQRRAALVAEKK--NVPEIGRITGEEWKAMSEAEKAPFE 333
Query: 306 XXXXXXXXQYAKDLESY 356
+Y ++ +Y
Sbjct: 334 AAARKQREEYQVEMAAY 350
Score = 37.5 bits (83), Expect = 0.028
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 138 KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 284
K K + K+P AY+LW +IK E P E++ G WK++
Sbjct: 150 KGKAGHERKKPCPAYVLWCKDQWNEIKKESPDADFKEVSNALGAKWKAL 198
>04_04_0814 +
28266590-28266615,28266780-28266860,28266986-28267043,
28267143-28267187,28268653-28268721,28268821-28268931,
28269038-28269046
Length = 132
Score = 44.0 bits (99), Expect = 3e-04
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 114 FKIFAIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMKD 290
FK RKK KPKR ++ + +L R Q +HP K V + K GE W++M D
Sbjct: 10 FKAAGKRKKAGGAGKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSD 69
Query: 291 K 293
+
Sbjct: 70 E 70
>01_06_0175 +
27229878-27230056,27231102-27231159,27231230-27231274,
27232711-27232791,27232884-27232922
Length = 133
Score = 37.1 bits (82), Expect = 0.037
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 156 KPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSM 284
+PK+P +A+ ++ R+ K E+P +K + E+ K GE W +M
Sbjct: 48 RPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTM 91
>08_02_1378 + 26536082-26537803
Length = 573
Score = 34.7 bits (76), Expect = 0.20
Identities = 23/58 (39%), Positives = 31/58 (53%)
Frame = -2
Query: 433 GAAFLPFFPRFCAFLXXXXXXXPLALYDSKSLAYCSLALAAFSSQILLSFIDFHISPP 260
G+AFLP CAFL PL+L ++ A+CS+A S L+S I H+S P
Sbjct: 111 GSAFLPALASACAFLVARSHRLPLSLAEAAETAFCSVA----SLADLVSRIASHLSLP 164
>09_06_0148 -
21214460-21214561,21214993-21215339,21215428-21215538,
21215673-21215835,21215921-21215999,21216110-21216228
Length = 306
Score = 32.7 bits (71), Expect = 0.80
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +3
Query: 132 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWX 305
R+++ +P R SAY + ++K+ HP + E ++ G+ W + DK ++
Sbjct: 220 RQRDPAQPRPNR--SAYNFFFKEKHPELKATHPH-REREYSRMIGDAWNRLAADDKMVYY 276
Query: 306 XXXXXXXXQYAKDLESYN 359
+Y ++++ YN
Sbjct: 277 RHSAEDKERYKREMQEYN 294
>02_02_0113 + 6914562-6915260
Length = 232
Score = 30.7 bits (66), Expect = 3.2
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 1430 PXGGGGVXRKGXXRAGXXXXAG*XQGRGAP 1341
P GGGGV R G + AG +G G P
Sbjct: 71 PGGGGGVQRSGSTKTVASSAAGWGRGGGGP 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,505,802
Number of Sequences: 37544
Number of extensions: 559936
Number of successful extensions: 1272
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4988906440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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