Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_E09_e357_09.seq
(1421 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 42 2e-04
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 40 0.001
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 37 0.006
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 37 0.008
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 36 0.014
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 34 0.055
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 32 0.17
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 32 0.22
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 30 0.90
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 27 4.8
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 27 6.3
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 41.9 bits (94), Expect = 2e-04
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +1
Query: 109 HIRTHTGERPHRCTH--CAATFAHSSALYNHNKLLHN 213
HIRTHTGE+PH CT CA F+ S L H ++ N
Sbjct: 44 HIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIHTN 80
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +1
Query: 85 TTQAILNSHIRTHTGERPHRCT--HCAATFAHSSALYNHNKLLHNPHRIK 228
T++ L +H+R+HTGE+P C+ C +F S AL H + +H ++
Sbjct: 88 TSRFALVAHLRSHTGEKPFICSVPECDRSFTRSDALAKHMRTVHEADTLR 137
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 37.1 bits (82), Expect = 0.006
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 100 LNSHIRTHTGERPHRCTHCAATFAHSSALYNHNKLLHN 213
+ SHI+TH +RP+RC C A F L H ++ N
Sbjct: 460 VESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHEN 497
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 36.7 bits (81), Expect = 0.008
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 73 HEXFTTQAILNSHIRTHTGERPHRCTHCAATFAHSSALYNHNKL 204
++ FT L SH+ THT RP +C+ C +FA H +L
Sbjct: 578 NKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQL 621
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 35.9 bits (79), Expect = 0.014
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 76 EXFTTQAILNSHIRTHTGERPHRCTHCAATFAHSSALYNHNKLLH 210
+ FT + H R+HT + C HC+++F S L H H
Sbjct: 26 KSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHVNQKH 70
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 33.9 bits (74), Expect = 0.055
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 82 FTTQAILNSHIRTHTGERPHRC--THCAATFAHSSALYNHNK 201
++ ++L H+RTH+ ERP C T C+ F S L H +
Sbjct: 34 YSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKR 75
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Frame = +1
Query: 82 FTTQAILNSHIRTHTGERPHRCT--HCAATFAHSSALYNHNKLLH 210
F TQ L HI H +P+ CT C F+ L +H H
Sbjct: 94 FYTQQHLERHIEVHRKPKPYACTWEGCDECFSKHQQLRSHISACH 138
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 32.3 bits (70), Expect = 0.17
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +1
Query: 109 HIRTHTGERPHRCTH--CAATFAHSSALYNH 195
HIR+HTGE+P C++ C F L H
Sbjct: 22 HIRSHTGEKPFECSYPSCKKRFTRRDELIRH 52
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 31.9 bits (69), Expect = 0.22
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Frame = +1
Query: 100 LNSHIRTHTGERPHRC-------THCAATFAHSSALYNHNKLLH-NP 216
L HIR+HT E+P C T C F+ L H + +H NP
Sbjct: 85 LKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQKIHRNP 131
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 29.9 bits (64), Expect = 0.90
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 76 EXFTTQAILNSHIRTHTGERPHRCTH--CAATFAHSSALYNHNKL 204
+ F+ + L H +HTGERP C + C F S + H ++
Sbjct: 475 QGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRHQRI 519
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 27.5 bits (58), Expect = 4.8
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -1
Query: 554 KYVDSINSYCRSEKNSKLVSEGDLLRFNHFSNLAISFLCSCMNELSDQVL 405
+YVD +N CR ++ V+EG L F+ + L IS + NE +L
Sbjct: 759 EYVDVLNEVCRLRSDTPEVNEG--LLFSFLAILEISSGRTLANEFGKHLL 806
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 206 YTILIELNKYKRHQNSLVGCSVG 274
YT+LI +N Y+ +QN G S+G
Sbjct: 35 YTVLIIVNNYESYQNIQFGESIG 57
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,776,456
Number of Sequences: 5004
Number of extensions: 60392
Number of successful extensions: 148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 790896844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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