Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_E09_e357_09.seq
         (1421 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ...    34   0.26 
At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein ...    31   1.8  
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ...    30   3.2  
At3g57570.1 68416.m06410 expressed protein                             30   4.2  

>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
           contains Pfam PF00096: Zinc finger, C2H2 type
          Length = 387

 Score = 33.9 bits (74), Expect = 0.26
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +1

Query: 76  EXFTTQAILNSHIRTHTGERPHRCTH--CAATFAHSSALYNHNKLLH 210
           + F+    L SH++TH+ E  H C +  C   +AH   L NH    H
Sbjct: 147 KAFSLDFNLRSHMKTHSQENYHICPYSGCVKRYAHEYKLKNHVAAYH 193


>At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein /
            transcription factor jumonji (jmj) family protein
            contains Pfam domains PF02375: jmjN domain, PF02373: jmjC
            domain and PF00096: Zinc finger, C2H2 type
          Length = 1354

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = +1

Query: 109  HIRTHTGERPHRCTH--CAATFAHSSALYNHNK 201
            HIR HTG RP+ C    C  TF   S    H +
Sbjct: 1310 HIRVHTGARPYVCAEPDCGQTFRFVSDFSRHKR 1342


>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
            transcription factor jumonji (jmj) family protein
            contains Pfam domians PF02375: jmjN domain, PF02373: jmjC
            domain and PF00096: Zinc finger, C2H2 type
          Length = 1327

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = +1

Query: 82   FTTQAILNSHIRTHTGERPHRC--THCAATFAHSSALYNH-NKLLH 210
            F  Q     H+R HTGERP+ C    C  +F   S    H  K +H
Sbjct: 1279 FKWQWARTEHLRLHTGERPYICKVDGCGLSFRFVSDYSRHRRKTMH 1324


>At3g57570.1 68416.m06410 expressed protein 
          Length = 1057

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 538 IESTYLDVYHYSVMDYILHCFID 606
           I ST  D   YSV+DY +HC I+
Sbjct: 866 IRSTGKDTSGYSVLDYTIHCLIE 888


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,177,596
Number of Sequences: 28952
Number of extensions: 373801
Number of successful extensions: 852
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3749412288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)