Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_E08_e349_10.seq
         (1528 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   6.0  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    23   7.9  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +1

Query: 91  SSALIVFCTYNLFTNVTMSEAFFDEYDYYNFDHDKHIFTGHGGKQRTKREATEHTNHFDP 270
           SS+  V  T N  TN   +  ++   DY +     H   G+ G + +  ++ + ++ F  
Sbjct: 237 SSSQPVLSTTNSTTNCYNNYPYYSNMDYLSSSTMSHSQFGN-GLETSWGKSRDESSWFYN 295

Query: 271 SGHSRK 288
           SG  RK
Sbjct: 296 SGWERK 301


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 386 IFLLQAIVVFIHRYIYCLLDFLLFSVFTNFVTIFLECP-EGSK*FVCSV 243
           I +  A ++F+   IY +   +  S F NFV  +L    E    F CS+
Sbjct: 8   ITISMAFIIFVSLEIYHIYTVVEESGFENFVKTYLVSDFENYVTFFCSL 56


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,236
Number of Sequences: 336
Number of extensions: 5040
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 45886400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)