Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_E08_e349_10.seq
         (1528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    31   0.42 
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    30   0.73 
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    29   2.2  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    28   3.9  
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    27   6.8  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    27   9.0  

>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 31.1 bits (67), Expect = 0.42
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 202 FTGHGGKQRTKREATEHTNHFDPSGHSRKIVTKLVNTENN 321
           ++GH         +T   NHF+ +GH    +T  +N+ NN
Sbjct: 242 YSGHNSPHTNYSASTPSFNHFNAAGHPTGNITPTLNSPNN 281


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 411 PPFARQLGNIPSTSHSRVYSPLHLLFIGLFVVLR 310
           P + R+L    S S+SR  SPLH LF+ L + ++
Sbjct: 762 PSYRRRLSMSCSVSYSRSPSPLHALFLALLLGIK 795


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 344 IYCLLDFLLFSVFTNFVTIFLEC 276
           ++CL D+  FS+F+ F+ I LEC
Sbjct: 211 LWCLDDYWYFSLFSMFMIIALEC 233


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +1

Query: 178 NFDHDKHIFTGHGGKQRTKREATEHTNHFDPSGHSRKIVTKLVNTENNKKSNKQ 339
           N + D +    H  K        +  +HFDPS + +K+V+      N K S+ Q
Sbjct: 18  NEEDDDYYSNAHSEKSEDHSNHIK-VSHFDPSSYKQKLVSVRETQRNRKFSSLQ 70


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 787 RGGARYPIRPIVSRITIHWPAFYNVVTGKTLAYPTXS 897
           RGG R P++ +V++     P    V+  +  A PT S
Sbjct: 201 RGGKRIPLKGVVNKALTECPTIKKVLVFQRSAEPTAS 237


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +1

Query: 163 EYDYYNFDHDKHIFTGHGGKQRTKREATEHTNHFDPSGHS 282
           +YD++N DH  H    H     +  EA          GHS
Sbjct: 21  DYDHHNHDHHGHDHHSHDSSSNSSSEAA-RLQFIQEHGHS 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,415,220
Number of Sequences: 5004
Number of extensions: 78056
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 856299168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)