Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_E08_e349_10.seq
         (1528 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    27   0.56 
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    27   0.56 
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    25   2.3  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    25   2.3  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    23   5.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   9.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   9.2  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 26.6 bits (56), Expect = 0.56
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 533 DVERGNA*NKPGVTC*VY 586
           DV++GN  N+P +TC +Y
Sbjct: 58  DVDKGNLVNEPSITCYMY 75


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 26.6 bits (56), Expect = 0.56
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 533 DVERGNA*NKPGVTC*VY 586
           DV++GN  N+P +TC +Y
Sbjct: 58  DVDKGNLVNEPSITCYMY 75


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 103 IVFCTYNLFTNVTMSEAFFDEYDYYNFD 186
           IV    +L T     E + D+YDY N D
Sbjct: 6   IVILILSLLTWTYAEELYSDKYDYVNID 33


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 103 IVFCTYNLFTNVTMSEAFFDEYDYYNFD 186
           IV    +L T     E + D+YDY N D
Sbjct: 6   IVILILSLLTWTYAEELYSDKYDYVNID 33


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 844 PAFYNVVTGKTLAYPTXSPCSTFPFRQL 927
           P +YN++  + +  P    C  FP R +
Sbjct: 333 PLYYNIINIEQIPVPVPIYCGNFPPRPM 360


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +2

Query: 236 GRPPNTRITSTPLDILEXXXXXXXXXXTTKSPINN 340
           G P NTR   TP + LE             +PI N
Sbjct: 140 GNPWNTRYCLTPTERLEALCWTQDEDVICSTPIGN 174


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +2

Query: 236 GRPPNTRITSTPLDILEXXXXXXXXXXTTKSPINN 340
           G P NTR   TP + LE             +PI N
Sbjct: 193 GNPWNTRYCLTPTERLEALCWTQDEDIICSTPIGN 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 313,298
Number of Sequences: 438
Number of extensions: 6043
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 53472375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)