Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_E08_e349_10.seq
         (1528 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23190.1 68416.m02924 lesion inducing protein-related similar...    33   0.66 

>At3g23190.1 68416.m02924 lesion inducing protein-related similar to
           ORF, able to induce HR-like lesions [Nicotiana tabacum]
          Length = 216

 Score = 32.7 bits (71), Expect = 0.66
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = +1

Query: 82  KLLSSALIVFCTYNLFTNVTMSEAFFDE--YDYYNFDHDKHIFTGHGGKQRTKREATEHT 255
           K +   L +F TY     + + +A      YD+YN D+D+  FT    K    +E  E T
Sbjct: 73  KFVGGILFIFNTYVGAALLLVYQAILSPILYDFYNRDYDRDHFTVFYTK---FKEFVEET 129

Query: 256 NHFDPSGHSRKIVTKLVNTENNKK 327
              D  G +  + T +VN E+ +K
Sbjct: 130 TSAD-GGVAMSLYTSVVNEESRQK 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,623,044
Number of Sequences: 28952
Number of extensions: 431405
Number of successful extensions: 835
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4086763008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)