Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_E07_e341_09.seq
         (1517 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6LEY8 Cluster: Putative uncharacterized protein; n=1; ...    35   6.4  
UniRef50_O33769 Cluster: Putative uncharacterized protein c0859;...    35   6.4  
UniRef50_Q8I3X3 Cluster: GTP-binding protein, putative; n=5; Pla...    34   8.5  

>UniRef50_Q6LEY8 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 573

 Score = 34.7 bits (76), Expect = 6.4
 Identities = 20/79 (25%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
 Frame = -3

Query: 732 FRGIFRINIVCHLDFNLSPYQISFTSVQYF*VQSLHTNIQIFPLYNISVDNFGE*LD--L 559
           F G   ++    L +N++ YQ    +++YF + +  TN ++F L +I ++N    ++   
Sbjct: 416 FNGKLFVSFPICLTYNINNYQFYLNNIKYFNINNFTTN-ELFILKDIYLNNKAYFMNNAF 474

Query: 558 CLINSKNILQFS--INLEL 508
           C +N++NI+  +  +N++L
Sbjct: 475 CYLNNENIIMSNEMLNIDL 493


>UniRef50_O33769 Cluster: Putative uncharacterized protein c0859;
           n=1; Sulfolobus solfataricus|Rep: Putative
           uncharacterized protein c0859 - Sulfolobus solfataricus
          Length = 199

 Score = 34.7 bits (76), Expect = 6.4
 Identities = 19/56 (33%), Positives = 32/56 (57%)
 Frame = -3

Query: 687 NLSPYQISFTSVQYF*VQSLHTNIQIFPLYNISVDNFGE*LDLCLINSKNILQFSI 520
           NL  Y +S  + +   +QS H N +I  +YNI+   + E + +C+IN +  L+ SI
Sbjct: 2   NLLDYLMSLRNRKIL-LQSYHINAKIVLIYNITQRLYKENISVCIINYEKFLKLSI 56


>UniRef50_Q8I3X3 Cluster: GTP-binding protein, putative; n=5;
           Plasmodium|Rep: GTP-binding protein, putative -
           Plasmodium falciparum (isolate 3D7)
          Length = 299

 Score = 34.3 bits (75), Expect = 8.5
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = -3

Query: 693 DFNLSPYQISFTSVQYF*VQSLHTNIQIFPLYNISVDN 580
           DFN++ Y  + +S++YF +Q L  NI +  L N+S  N
Sbjct: 258 DFNINEYIHNVSSLKYFGIQELRANISLIALDNMSSKN 295


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,160,426,974
Number of Sequences: 1657284
Number of extensions: 20776295
Number of successful extensions: 41413
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39554
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 161715069475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)