Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_E07_e341_09.seq
         (1517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0189 + 15438538-15438591,15438671-15438891,15438982-154392...    34   0.26 
02_01_0589 - 4355207-4355410,4355574-4355747,4356234-4356344,435...    31   3.2  
06_03_0962 + 26351861-26351899,26353304-26353530,26355183-263554...    30   5.5  
04_04_1125 + 31085106-31085714                                         29   7.3  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           29   7.3  
03_02_0609 - 9823120-9823573,9823903-9824102,9824240-9824335,982...    29   9.7  
02_05_0510 + 29637160-29637506,29637714-29637775,29638047-296381...    29   9.7  

>09_04_0189 +
           15438538-15438591,15438671-15438891,15438982-15439214,
           15439322-15439541,15440091-15440212,15441086-15441339,
           15441425-15441532,15441622-15441828,15441929-15442213,
           15442312-15442467
          Length = 619

 Score = 34.3 bits (75), Expect = 0.26
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +1

Query: 145 LFINR---LKT*IVNGNTLLSVPALFNVPPGGCEAMLLLAIKVNLLRKLGKSIATYWCPT 315
           LF+N+   L+  +V+GNTL +   L  +P G  E  +  A       KLG++IA Y C  
Sbjct: 414 LFVNKHPGLRVRVVHGNTLTAAVILNEIPQGTTEVFMTGATS-----KLGRAIALYLCRK 468

Query: 316 CIRL 327
            +R+
Sbjct: 469 KVRV 472


>02_01_0589 -
           4355207-4355410,4355574-4355747,4356234-4356344,
           4356506-4356712,4357609-4357716,4358442-4358698,
           4359120-4359241,4359782-4360001,4360877-4361130,
           4361782-4362015,4362143-4362189
          Length = 645

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = +1

Query: 145 LFINR---LKT*IVNGNTLLSVPALFNVPPGGCEAMLLLAIKVNLLRKLGKSIATYWCPT 315
           LF+N+   L+  +V+GNTL +   L  +P    +  L  A       KLG++IA Y C  
Sbjct: 424 LFVNKHPELRVRVVHGNTLTAAVILNEIPSNVKDVFLTGATS-----KLGRAIALYLCRK 478

Query: 316 CIRL 327
            IR+
Sbjct: 479 KIRV 482


>06_03_0962 +
           26351861-26351899,26353304-26353530,26355183-26355421,
           26356276-26356495,26358093-26358214,26358428-26358729,
           26358776-26358883,26359314-26359376,26359415-26359621,
           26359702-26359812,26359899-26360228
          Length = 655

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = +1

Query: 160 LKT*IVNGNTLLSVPALFNVPPGGCEAMLLLAIKVNLLRKLGKSIATYWCPTCIRL 327
           L+  +V+GNTL +   L  +P    E  L  A       KLG++IA Y C   IR+
Sbjct: 458 LRVRVVHGNTLTAAVILNEIPGDVAEVFLTGATS-----KLGRAIALYLCRKKIRV 508


>04_04_1125 + 31085106-31085714
          Length = 202

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 20/73 (27%), Positives = 21/73 (28%), Gaps = 1/73 (1%)
 Frame = +2

Query: 1244 PPXXPQXSTETXTGXKXKTPPXXXPXPPXXXP-XKXXVXXPXXPXXAXXXXPPXXXXPXG 1420
            PP  P  +T T T     TPP   P PP   P        P  P        P    P  
Sbjct: 47   PPPTPTPATPT-TPPTPWTPPPATPTPPTPTPWTPTPATPPPTPATPATPTTPPTPAPAP 105

Query: 1421 XXXXGXXPXGXXK 1459
                G  P    K
Sbjct: 106  STPTGKCPVDTLK 118


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 15/66 (22%), Positives = 19/66 (28%)
 Frame = +1

Query: 1246 PXXPPGVXXNXHXXEXXNPPXXXPXAPXXPXXEXXGXXPXXPXXGPXEXAPXPXXAPXXX 1425
            P  PP +  + H     +PP   P  P        G  P  P        P P  +P   
Sbjct: 284  PPAPPPLPPSHHHHHGHHPPPPHPLPPGAGAGAGTGAPPPPPAHPAAPAPPPPAPSPSAA 343

Query: 1426 XXRXXP 1443
                 P
Sbjct: 344  GAGSGP 349


>03_02_0609 -
           9823120-9823573,9823903-9824102,9824240-9824335,
           9824454-9824567,9824711-9824774,9825206-9825312
          Length = 344

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 394 HYPVTRVYIGKLIS-IKSLDLELIFYR 471
           HY  TR+Y+G+L S  +S DLE +F R
Sbjct: 7   HYGSTRLYVGRLSSRTRSRDLEYLFGR 33


>02_05_0510 + 29637160-29637506,29637714-29637775,29638047-29638161,
            29638296-29638419,29638604-29638684,29639122-29639463,
            29639562-29639728,29639810-29640639,29641103-29642568
          Length = 1177

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -3

Query: 837  RFHTNVIVSHAHRSELCKISKL*NV--VYNLYITNSRFRGIFRIN 709
            R HT  IVS+    +LC + ++  +   Y +   +  ++GIF +N
Sbjct: 964  RLHTMTIVSNDDGKQLCSVQQISGISNEYAVIAPSEEYKGIFSVN 1008


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,263,824
Number of Sequences: 37544
Number of extensions: 571788
Number of successful extensions: 962
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4872885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)