Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_E07_e341_09.seq
         (1517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41557-8|AAA83308.2|  229|Caenorhabditis elegans Hypothetical pr...    30   3.7  
U41557-7|AAQ01534.1|  381|Caenorhabditis elegans Hypothetical pr...    30   3.7  
Z74033-4|CAA98471.2|  822|Caenorhabditis elegans Hypothetical pr...    29   6.5  
AB095019-1|BAC22611.1|  822|Caenorhabditis elegans ubiquitin-spe...    29   6.5  

>U41557-8|AAA83308.2|  229|Caenorhabditis elegans Hypothetical
           protein C50F7.1a protein.
          Length = 229

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = +3

Query: 108 IIFIIYGYNKYKFIYKSAKNINCEREYIIVCACIIQRPTWRMRSDATVS 254
           II+I Y + KY+  +KS   + C+  Y  V + I++R +   +S AT+S
Sbjct: 149 IIYIAYSH-KYRRAFKSILLMPCKTRYERVRSTILRRHSRGFKSTATIS 196


>U41557-7|AAQ01534.1|  381|Caenorhabditis elegans Hypothetical
           protein C50F7.1b protein.
          Length = 381

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = +3

Query: 108 IIFIIYGYNKYKFIYKSAKNINCEREYIIVCACIIQRPTWRMRSDATVS 254
           II+I Y + KY+  +KS   + C+  Y  V + I++R +   +S AT+S
Sbjct: 301 IIYIAYSH-KYRRAFKSILLMPCKTRYERVRSTILRRHSRGFKSTATIS 348


>Z74033-4|CAA98471.2|  822|Caenorhabditis elegans Hypothetical protein
            F38B7.5 protein.
          Length = 822

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 1221 PXLRXXFRLPNGXXXGIXPNKXCFXKRVXFWAT 1123
            P     F+LP G   GI P+  CF + + +W T
Sbjct: 586  PSKMYQFQLP-GATRGITPDGNCFYRAISWWIT 617


>AB095019-1|BAC22611.1|  822|Caenorhabditis elegans ubiquitin-specific
            protease protein.
          Length = 822

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 1221 PXLRXXFRLPNGXXXGIXPNKXCFXKRVXFWAT 1123
            P     F+LP G   GI P+  CF + + +W T
Sbjct: 586  PSKMYQFQLP-GATRGITPDGNCFYRAISWWIT 617


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,002,334
Number of Sequences: 27780
Number of extensions: 520343
Number of successful extensions: 971
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4359137160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)