Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_E07_e341_09.seq
         (1517 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   3.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   5.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   5.2  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
            kinase foraging protein.
          Length = 678

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +2

Query: 1244 PPXXPQXSTETXTGXKXKTPPXXXPXPP 1327
            PP  P+    T T    + PP   P PP
Sbjct: 641  PPIMPRVQNATDTTNFDEYPPDSDPPPP 668


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = -1

Query: 227 PGGTLNNAGTDNNVFPFTIYVFSRFINKFILVISIYNKD 111
           PGG   N G  N + P  ++++          + +YN D
Sbjct: 147 PGG---NGGPRNGLLPLLVWIYGGGFMSGTATLDVYNAD 182


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = -1

Query: 227 PGGTLNNAGTDNNVFPFTIYVFSRFINKFILVISIYNKD 111
           PGG   N G  N + P  ++++          + +YN D
Sbjct: 147 PGG---NGGPRNGLLPLLVWIYGGGFMSGTATLDVYNAD 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 343,465
Number of Sequences: 438
Number of extensions: 7007
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 53113500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)