Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_E07_e341_09.seq
         (1517 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57800.1 68418.m07228 CER1 protein, putative (WAX2) similar t...    33   0.37 
At5g45770.1 68418.m05627 leucine-rich repeat family protein cont...    31   2.6  
At1g50460.1 68414.m05656 hexokinase, putative similar to hexokin...    29   6.1  
At1g33770.1 68414.m04174 protein kinase family protein contains ...    29   8.0  
At1g26150.1 68414.m03192 protein kinase family protein similar t...    29   8.0  

>At5g57800.1 68418.m07228 CER1 protein, putative (WAX2) similar to
           maize glossy1 homolog GI:2213643 from [Oryza sativa];
           contains Pfam profile PF01598: Sterol desaturase
          Length = 632

 Score = 33.5 bits (73), Expect = 0.37
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +1

Query: 145 LFINR---LKT*IVNGNTLLSVPALFNVPPGGCEAMLLLAIKVNLLRKLGKSIATYWCPT 315
           LF+N+   L+  +V+GNTL +   L+ +P    E  L  A       KLG++IA Y C  
Sbjct: 422 LFVNKHPDLRVRVVHGNTLTAAVILYEIPKDVNEVFLTGATS-----KLGRAIALYLCRR 476

Query: 316 CIRL 327
            +R+
Sbjct: 477 GVRV 480


>At5g45770.1 68418.m05627 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 425

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -1

Query: 320 IHVGHQYVAMLLPNLRSKLTFIANSSIASHPPGGTLNNA 204
           +++ H  ++  +PN    LTF+ N S+AS+   GT+ N+
Sbjct: 222 LNLSHNSLSGQIPNKIKSLTFLKNLSLASNKLSGTIPNS 260


>At1g50460.1 68414.m05656 hexokinase, putative similar to hexokinase
           1 [Spinacia oleracea] Swiss-Prot:Q9SEK3
          Length = 498

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = -1

Query: 344 RPRILYNRIHVGHQYVAMLLPNLRSKLTFIANSSIASHPPGGTLNNAGTDNNVFPFTIYV 165
           R +  Y  +H+G  Y  +L   L  + +++    +  HP    L N+ T   +F F  + 
Sbjct: 92  REKGTYYALHLGGTYFRILRVLLGDQRSYLDVQDVERHPIPSHLMNS-TSEVLFNFLAFS 150

Query: 164 FSRFINK 144
             RFI K
Sbjct: 151 LERFIEK 157


>At1g33770.1 68414.m04174 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 614

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 473 DHP*FLKYRFLINSKLIENCRMFFEFIKH 559
           DHP  +K + L+ SKL  +  + FE+++H
Sbjct: 196 DHPNVMKLQCLVTSKLSGSLHLVFEYMEH 224


>At1g26150.1 68414.m03192 protein kinase family protein similar to Pto
            kinase interactor 1 GI:3668069 from [Lycopersicon
            esculentum]
          Length = 760

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 15/57 (26%), Positives = 16/57 (28%)
 Frame = +2

Query: 1244 PPXXPQXSTETXTGXKXKTPPXXXPXPPXXXPXKXXVXXPXXPXXAXXXXPPXXXXP 1414
            PP  P       T     +PP   P PP   P       P  P       PP    P
Sbjct: 124  PPPPPPTEAPPTTPITSPSPPTNPPPPPESPPSLPAPDPPSNPLPPPKLVPPSHSPP 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,407,764
Number of Sequences: 28952
Number of extensions: 478375
Number of successful extensions: 958
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4057847232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)