Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_E06_e333_10.seq
         (1524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    28   3.0  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    27   5.2  
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    27   5.2  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    27   5.2  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    27   5.2  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    27   6.8  
SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyce...    27   6.8  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    27   9.0  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -1

Query: 810  NNSLSVLFNSFANCIVWGLWK-RHSVNMNFSSRPNEFQTFLCRRNSIGLPPVTLKTISNN 634
            +N ++ L  SF N +    W  R  V+    SR   ++ FL    + GLPP+T+    N+
Sbjct: 2377 SNLVTKLLCSFENYVSLAEWNPRSKVDSTSFSRFPGYKWFLKDAANYGLPPITMNVKVND 2436


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 567 KCGYQTALFNGYLWRFPLTEFSSIDQQNGFW 475
           KCGY    F+  +++  L+  ++ D +NGFW
Sbjct: 160 KCGYIFCNFHS-MYQIKLSIHATYDSENGFW 189


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 417 PATRISLTTTSTGM*SAILSFANGRRRTTPLAAPIMKP*GPT 292
           P +  S+TTTST +  ++   +     TT   AP+ +P  PT
Sbjct: 178 PPSPTSITTTSTSIDPSVAFSSKSTLATTRTNAPLSRPSQPT 219


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
 Frame = -2

Query: 590 AIATVRILNA---GTKLRFSMDIYGDSR*QSFQASTSRTASGLMMSNGRLLDL 441
           AI T   LN+   GT L+ ++ +YG +  +S QA  ++ AS ++ + GRLLDL
Sbjct: 249 AIQTYENLNSLIQGTNLK-AVVVYGGAP-KSEQARAAKNASVIIGTPGRLLDL 299


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = +2

Query: 515 NGNLHKY-PLKSAVWYPHLKFVPSLWLFRLSAIFIHFIPAILLDMVLRVTGGRPI 676
           N  L KY P+K    Y H+ F  +L  F+LS ++ HFI +  ++ +LR TG +P+
Sbjct: 511 NDILSKYLPVK----YEHVVFC-NLSEFQLS-LYKHFITSPEINKILRGTGSQPL 559


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
 Frame = +2

Query: 596 RLSAIFIHFIPAILLDMVLRVTGGR------PILFRLHKNVWNSLGRLEKFIFTEWRFHN 757
           +++++FIHF P ++L  ++ +T         P + ++ K    S   +  F +  W+   
Sbjct: 218 KITSLFIHFFPPLVLHTIVHLTNKSYLKDRFPAVLKVKKIDLLSSVEIASFFYALWQIWY 277

Query: 758 PHTIQLAKE 784
              IQ+ K+
Sbjct: 278 YFFIQVGKQ 286


>SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 168

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +2

Query: 125 IEPKLLKDHPNTYTFTKHLAEHEVVKCADLFPCTIVRPTMIVA 253
           I   + +D P  Y F K LAE E  KC D    TI  P + VA
Sbjct: 6   IRSVIKEDLPTVYQFIKELAEFE--KCEDQVEATI--PNLEVA 44


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 655 SNRRQAYTVPSAQKRLELIGSAGKVHIHRMAFPQSPYDTIS 777
           S+ +  YT+  AQ  LE +G     + HR+      Y  I+
Sbjct: 322 SHAKYGYTLEFAQSHLEEVGKLANKYNHRLTMHPGQYTQIA 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,881,024
Number of Sequences: 5004
Number of extensions: 101717
Number of successful extensions: 240
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 854316994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)