Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_E06_e333_10.seq
(1524 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0085 + 12108474-12108552,12108656-12108759,12109726-121099... 71 2e-12
08_02_1566 + 27909297-27909390,27909542-27909645,27912899-279130... 66 5e-11
07_03_0423 + 18035688-18036572,18036659-18036978,18052618-180527... 63 6e-10
09_06_0327 + 22359524-22359602,22359732-22359835,22362073-223622... 62 1e-09
04_03_0542 + 16940464-16940527,16941906-16942101,16942204-169423... 60 5e-09
12_02_0457 + 19239816-19241319,19241337-19241632,19241729-192418... 36 0.11
07_03_0075 - 13096386-13096554,13096642-13096766,13096851-130971... 34 0.26
04_03_0543 + 16955440-16955518,16956623-16956726,16957456-169576... 33 0.45
08_01_0383 - 3405986-3407359,3409283-3410827 33 0.60
03_02_0324 - 7463482-7463601,7463660-7463736,7463827-7463883,746... 33 0.60
11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142 31 3.2
12_01_0669 + 5693047-5693141,5694222-5694344,5694528-5694630,569... 30 5.5
02_03_0290 + 17344173-17344514 30 5.5
10_08_0410 - 17716370-17716743,17716839-17716939,17717104-177173... 29 7.3
>08_02_0085 + 12108474-12108552,12108656-12108759,12109726-12109925,
12110003-12110103,12110184-12110379,12110584-12110745,
12110856-12110937,12111741-12112004,12113047-12113174,
12113795-12113957
Length = 492
Score = 70.9 bits (166), Expect = 2e-12
Identities = 70/258 (27%), Positives = 117/258 (45%), Gaps = 14/258 (5%)
Frame = +2
Query: 152 PNTYTFTKHLAEHEVVKCADLFPCTIVRPTMIVASWKEPVPGWTCSKVGPQGFMMGAAKG 331
PNTY FTK + E + P I+RP++I + KEP+PGW ++G AK
Sbjct: 234 PNTYVFTKAMGEMLLGHLRGDLPVVIIRPSIITSILKEPLPGWMEGIRTIDSVIIGYAKQ 293
Query: 332 VVRRLPLAKDNIADYIPVDVVVNEILVAGWHTATTKSGLTVYHCSSSTQKPFCWSMLENS 511
+ + + I D IP D+VVN ++VA + + T+YH +SS P +++L ++
Sbjct: 294 TLSFFLVDLNLIMDVIPGDMVVNAMMVA-MAAHSGEQAQTIYHVTSSLSNPAPYAVLSDA 352
Query: 512 VNGNLHKYPLKSAVWYPHL---KFVPSLWLFRLSAIFIHFIPAILLDMVLRVTGGR---- 670
+ P A L +F ++ FR + +P +L +V G
Sbjct: 353 GHRYFFANPPPRAGKNGRLRRMRFFSTVASFRAHMAINYKLPLEILRLVNIALCGMFSRR 412
Query: 671 -PILFRLHKNVWNSLGRLEKFIFTEWRFHNPHT----IQLAKELNKTD-SELFYIDITTI 832
L R +K V + + + + F + +T I + K+ +K D F D +I
Sbjct: 413 YDELSRKYKFVMHLVELYAPYTLFKGCFDDINTEKLRITMRKQEDKNDGGYCFDFDPKSI 472
Query: 833 YWEDYF-KNLLLGVRRYL 883
W++YF K + GV +YL
Sbjct: 473 DWDEYFYKVHIPGVVKYL 490
>08_02_1566 + 27909297-27909390,27909542-27909645,27912899-27913098,
27913214-27913314,27913427-27914130,27914671-27914834,
27914941-27915100
Length = 508
Score = 66.5 bits (155), Expect = 5e-11
Identities = 71/270 (26%), Positives = 125/270 (46%), Gaps = 27/270 (10%)
Frame = +2
Query: 155 NTYTFTKHLAE----HEVVKCADLFPC-------TIVRPTMIVASWKEPVPGWTCSKVGP 301
NTY FTK + E +++ + P +VRP++I + ++PVPGW
Sbjct: 237 NTYVFTKAMGEMVLSRMLLQSSSPAPAITGAGGVVVVRPSIITSIQRDPVPGWMQGTRTI 296
Query: 302 QGFMMGAAKGVVRRLPLAKDNIADYIPVDVVVNEILVAG-WHTATT-KSGLTVYHCSSST 475
++G AK + D + D IP D+VVN ++ A H+ + VYH SSS
Sbjct: 297 DTLIIGYAKQNLSCFLGDLDLVMDVIPGDMVVNAMMAAAVAHSGEAGQERPAVYHVSSSL 356
Query: 476 QKPFCWSMLENSVNGNLHKYPL--KSAVWYP--HLKFVPSLWLFRLSAIFIHFIPAILLD 643
+ P +S+L + + + P K P + F ++ F++ + + +P +L
Sbjct: 357 RNPAAYSVLYEAGRRHFTEKPRVGKRGEVIPTKEMHFFKTIASFQVYMLVKYRLPLEILH 416
Query: 644 MV-LRVTGGRPILF----RLHKNVWNSLGRLEKFIFTEWRFHNPHTIQLAKELNKT---- 796
+V L + G L+ R ++ V + + F F + F + + +L + + K+
Sbjct: 417 LVNLLLCGLFSRLYSNLARQYRYVMHLVDVYGPFAFFKGCFDDINLERLRQRMGKSRNPQ 476
Query: 797 DSELFYIDITTIYWEDYFKNL-LLGVRRYL 883
D E+F D TI WEDYF + + GV +Y+
Sbjct: 477 DDEMFNFDPKTIDWEDYFYRIHIPGVLKYI 506
>07_03_0423 +
18035688-18036572,18036659-18036978,18052618-18052724,
18053001-18053104,18054129-18054328,18054422-18054522,
18054695-18054841,18055007-18055166,18055287-18055368,
18056070-18056336,18056846-18056973,18057513-18057672
Length = 886
Score = 62.9 bits (146), Expect = 6e-10
Identities = 38/117 (32%), Positives = 56/117 (47%)
Frame = +2
Query: 152 PNTYTFTKHLAEHEVVKCADLFPCTIVRPTMIVASWKEPVPGWTCSKVGPQGFMMGAAKG 331
PNTY FTK + E V P I+RP+++ + + +P+PGW + AK
Sbjct: 628 PNTYVFTKAMGEMLVGHFGRELPVVIIRPSIVSSIYHDPLPGWIEGTRTIDSIISAYAKQ 687
Query: 332 VVRRLPLAKDNIADYIPVDVVVNEILVAGWHTATTKSGLTVYHCSSSTQKPFCWSML 502
+ A I D IP D+VVN +LVA ++ G + H +SS Q P S +
Sbjct: 688 TIPHFIGAGHVILDVIPGDMVVNAMLVA-MAVHWSERGQVIIHVTSSQQNPLSTSTM 743
>09_06_0327 +
22359524-22359602,22359732-22359835,22362073-22362272,
22362359-22362459,22362551-22363005,22363079-22363645
Length = 501
Score = 61.7 bits (143), Expect = 1e-09
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 8/125 (6%)
Frame = +2
Query: 152 PNTYTFTKHLAE----HEVVKCADL---FPCTIVRPTMIVASWKEPVPGWTCSKVGPQGF 310
PNTY FTK + E ++V A P I RP++I + ++P+PGW
Sbjct: 232 PNTYVFTKAMGEMMLQEQLVAGAGRRHGIPVVIARPSIITSVHRDPLPGWIEGTRTIDAI 291
Query: 311 MMGAAKGVVRRLPLAKDNIADYIPVDVVVNEILVA-GWHTATTKSGLTVYHCSSSTQKPF 487
++G AK + D I D +P D+VVN ++ A H+ + S + VYH +SS + P
Sbjct: 292 IIGYAKQSLSCFLADLDLIMDVVPGDLVVNAMMAAMVAHSRGSSSEMAVYHVTSSMRHPA 351
Query: 488 CWSML 502
+++L
Sbjct: 352 AYAVL 356
>04_03_0542 +
16940464-16940527,16941906-16942101,16942204-16942365,
16942721-16942802,16942873-16943139,16943285-16943416
Length = 300
Score = 60.1 bits (139), Expect = 5e-09
Identities = 35/129 (27%), Positives = 61/129 (47%)
Frame = +2
Query: 152 PNTYTFTKHLAEHEVVKCADLFPCTIVRPTMIVASWKEPVPGWTCSKVGPQGFMMGAAKG 331
PNTY TK + E + + P IVRP++I +++++P+PGW +
Sbjct: 94 PNTYVLTKAMGEMLLRQLGGDLPVVIVRPSIITSTFQDPMPGWIEETRTIDAIFVAYNDQ 153
Query: 332 VVRRLPLAKDNIADYIPVDVVVNEILVAGWHTATTKSGLTVYHCSSSTQKPFCWSMLENS 511
+ I D IP D+V++ ++A ++ K +YH +S+ Q P S++E S
Sbjct: 154 TLPCFIFDGSVIFDLIPGDMVIS-AMMAAINSHWNKQAQVIYHVTSAHQNPIQLSLIEES 212
Query: 512 VNGNLHKYP 538
+ H P
Sbjct: 213 MYKYFHTNP 221
>12_02_0457 +
19239816-19241319,19241337-19241632,19241729-19241829,
19241939-19242029,19242158-19242268,19242360-19242425,
19242457-19242462
Length = 724
Score = 35.5 bits (78), Expect = 0.11
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Frame = +2
Query: 311 MMGAAKGVVRRLPLAKDNIADYIPVDVVVNEI-LVAGW-HTATTKSGLTVYHCSSSTQKP 484
M G K V L L KD +I VV+N++ + GW H + + S ++
Sbjct: 537 MHGLEKQTVETLALLKDRNVRFI---VVLNKVDRLCGWKHCPDAPIKKALENQSGDVKRE 593
Query: 485 FCWSMLENSVNGNLHKYPLKSAVWYPHLKFVPSLWLFRLSAIFIHFIPAILLDMVLR 655
F W + + V L + +A++Y + KF + SAI IP +LL +VLR
Sbjct: 594 FGWRLTK--VVTQLKENGFNTALYYDNQKFRKVFDIVPTSAISGEGIPDLLLMLVLR 648
>07_03_0075 -
13096386-13096554,13096642-13096766,13096851-13097117,
13097506-13097587,13097956-13098172,13098260-13098360,
13098425-13098627,13099261-13099334,13100246-13100429
Length = 473
Score = 34.3 bits (75), Expect = 0.26
Identities = 47/205 (22%), Positives = 79/205 (38%), Gaps = 15/205 (7%)
Frame = +2
Query: 281 TCSKVGPQG----FMMGAAKGVVRRLPLAKDNIADYIPVDVVVNEIL-VAGWHTATTKSG 445
T K+G Q ++ KG ++ P + D +P D+VVN +L + +H T
Sbjct: 252 TMKKIGAQRAIDTWITNYGKGTLKFFPTDVATVIDIVPADIVVNAMLCIISYHPQGTAD- 310
Query: 446 LTVYHCSSSTQKPFCWSMLENSVNGNLHKYPLKSA----VWYPHLKFVPSLWLFRLSAIF 613
+Y SS P + + + P A V F+ ++ F +
Sbjct: 311 -FIYQIGSSMSNPIKLGQMSQTTYKYFSQIPFVGAKGDVVKVKQPNFLATMASFYETMDK 369
Query: 614 IHFIPAILLDMV---LRVTGGRPILFRLHKNVWNSLGRLE---KFIFTEWRFHNPHTIQL 775
+ +P L DM+ L T R I L + ++ E F ++ RF + L
Sbjct: 370 HYKMP--LQDMLRRGLSTTEDRHIYNHLKREYDFTVAVAEVYWPFTISKTRFDDSKMQNL 427
Query: 776 AKELNKTDSELFYIDITTIYWEDYF 850
+ + D EL +I I W+ YF
Sbjct: 428 MGMVTERDRELIPCNIKFINWDKYF 452
>04_03_0543 +
16955440-16955518,16956623-16956726,16957456-16957655,
16958554-16958654,16959408-16959603,16960243-16960324,
16960402-16960668,16960790-16960917,16961285-16961465
Length = 445
Score = 33.5 bits (73), Expect = 0.45
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +2
Query: 365 IADYIPVDVVVNEILVAGWHTATTKSGLTVYHCSSSTQKPFCWSMLENSV 514
I D IP D+V+N ++ A ++ K +YH +S+ Q P S++E S+
Sbjct: 251 IFDLIPGDMVINAMMAA-INSQWNKRAQVIYHVTSAHQNPLPVSLIEESM 299
>08_01_0383 - 3405986-3407359,3409283-3410827
Length = 972
Score = 33.1 bits (72), Expect = 0.60
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 281 TCSKVGPQGFMMGAAKGVV-RRLPLAKDNIADYIPVD 388
+CS VG GF+ G G++ R+ LA DN+ D I +D
Sbjct: 613 SCSTVGMGGFVSGGGFGLISRKFALAADNVLDAILMD 649
>03_02_0324 -
7463482-7463601,7463660-7463736,7463827-7463883,
7464154-7464246,7464528-7464654,7464836-7466794
Length = 810
Score = 33.1 bits (72), Expect = 0.60
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Frame = -1
Query: 660 VTLKTISNNIAGMKC-INM---ADNLKSHSDGTNFKCGYQTALFNGYLWRFPLTEFSSI- 496
+ LK + N I MKC I+M + + + TN + Y+ AL + L + + I
Sbjct: 642 IILKDV-NRIHYMKCNIHMQLPSQKERRQTRSTNLRDWYKIALSKDEMLEEELLQVACIT 700
Query: 495 DQQNGFWVDDEQW*TV 448
D Q+G+++D++QW T+
Sbjct: 701 DSQHGYYLDNQQWRTI 716
>11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142
Length = 751
Score = 30.7 bits (66), Expect = 3.2
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 272 PGWTCSKVGPQGFMMGAAKG-VVRRLPLAKDNIADYIPVD 388
PG CS VG G++ G G ++R+ + DN+ D + V+
Sbjct: 175 PGGACSTVGVGGYLSGGGIGLMMRKFGIGADNVLDAMIVN 214
>12_01_0669 +
5693047-5693141,5694222-5694344,5694528-5694630,
5694793-5695041
Length = 189
Score = 29.9 bits (64), Expect = 5.5
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 746 RFHNPHTIQLAKELNKTDSELFYID 820
RFHNP +++ K++ K D ELF+ D
Sbjct: 158 RFHNPKILEIVKKM-KEDKELFFKD 181
>02_03_0290 + 17344173-17344514
Length = 113
Score = 29.9 bits (64), Expect = 5.5
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 310 HDGRSQRCGSSSTISERQYSRLHTSRCGCQ*DPCC 414
HD + CG SS + ER S R GC PCC
Sbjct: 53 HDADADACGWSSAVMER--SLALRRRRGCASSPCC 85
>10_08_0410 -
17716370-17716743,17716839-17716939,17717104-17717300,
17717392-17717677,17717768-17718004,17718226-17718281,
17720042-17721226
Length = 811
Score = 29.5 bits (63), Expect = 7.3
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = +1
Query: 604 GHIYTFHTSYIIGYGLKSNRRQAYTVP----SAQKRLELIGSAGKVH 732
GH Y+ T I L+SNRRQ YT+ S+ KRLEL+ GKV+
Sbjct: 553 GHPYSLAT--IRNGILRSNRRQPYTIAKPFGSSDKRLELV--QGKVN 595
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,901,061
Number of Sequences: 37544
Number of extensions: 675802
Number of successful extensions: 1447
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4896089576
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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