Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_E06_e333_10.seq
         (1524 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)               64   2e-10
SB_46750| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.4  

>SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)
          Length = 373

 Score = 64.5 bits (150), Expect = 2e-10
 Identities = 30/66 (45%), Positives = 46/66 (69%)
 Frame = +2

Query: 77  RVISLVGTLSDEALDEIEPKLLKDHPNTYTFTKHLAEHEVVKCADLFPCTIVRPTMIVAS 256
           ++IS +  +SD+ +  I P ++   PNTYTFTK LAEH +++ A   P +I RP++I AS
Sbjct: 159 KLISSLEWMSDDMVKAITPYVIDQRPNTYTFTKSLAEHVLLQEASGLPVSIFRPSIIGAS 218

Query: 257 WKEPVP 274
           +KEP+P
Sbjct: 219 FKEPLP 224



 Score = 56.8 bits (131), Expect = 4e-08
 Identities = 39/174 (22%), Positives = 73/174 (41%), Gaps = 2/174 (1%)
 Frame = +2

Query: 368 ADYIPVDVVVNEILVAGWHTA--TTKSGLTVYHCSSSTQKPFCWSMLENSVNGNLHKYPL 541
           A  +PV +    I+ A +         G+ VY+C +    P  W  +   ++     YP+
Sbjct: 202 ASGLPVSIFRPSIIGASFKEPLPVPSDGIPVYNCGTGVLNPITWGEISEIMHKTFSIYPM 261

Query: 542 KSAVWYPHLKFVPSLWLFRLSAIFIHFIPAILLDMVLRVTGGRPILFRLHKNVWNSLGRL 721
           +     P+  F  S  ++       H IPA++ DM+    G +P + RL++ +  +   +
Sbjct: 262 EDVFRRPNFNFESSKLMYYYWTYISHRIPALIADMLSIFIGQKPKMNRLYRKLQKATDVM 321

Query: 722 EKFIFTEWRFHNPHTIQLAKELNKTDSELFYIDITTIYWEDYFKNLLLGVRRYL 883
           + F   EW           KE        F  D+  I W  YF++  +G++++L
Sbjct: 322 KVFTSREW-----------KE--------FGFDVRVIDWNKYFEDFTIGMKQFL 356


>SB_46750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +2

Query: 71  GTRVISLVGTLSDEALDEIEPKLLKDHPNTYTFTKHLAE 187
           G R   ++      ALD I PKL +DH N     K L E
Sbjct: 153 GMRQAGVLAAAGIYALDNIAPKLSQDHENARALAKGLQE 191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,718,923
Number of Sequences: 59808
Number of extensions: 770427
Number of successful extensions: 1626
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1625
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4953341894
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)