Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_E06_e333_10.seq
         (1524 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical ...   159   5e-39
AF025453-12|AAK31405.1|  600|Caenorhabditis elegans Hypothetical...    32   0.93 
AF016438-13|AAK84531.2|  402|Caenorhabditis elegans Nuclear horm...    31   2.8  
U50311-4|AAA92309.1|  491|Caenorhabditis elegans Serpentine rece...    30   3.8  
U50311-3|AAK68203.1|  589|Caenorhabditis elegans Serpentine rece...    30   3.8  
AL132862-23|CAB60559.1|  540|Caenorhabditis elegans Hypothetical...    29   6.6  

>AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical
           protein Y71H10A.2 protein.
          Length = 536

 Score =  159 bits (386), Expect = 5e-39
 Identities = 81/270 (30%), Positives = 136/270 (50%), Gaps = 1/270 (0%)
 Frame = +2

Query: 77  RVISLVGTLSDEALDEIEPKLLKDHPNTYTFTKHLAEHEVVKCADLFPCTIVRPTMIVAS 256
           +++  +  + DE L +I PK+L   PNTYT TK LAE  +   A   P  I+RP+++ A 
Sbjct: 177 KLVDALSWMDDETLTKITPKILGLRPNTYTLTKALAESTIETEAKDIPVIIIRPSIVGAM 236

Query: 257 WKEPVPGWTCSKVGPQGFMMGAAKGVVRRLPLAKDNIADYIPVDVVVNEILV-AGWHTAT 433
           W+ P+PGWT +  GP G      +GV+  +  + ++ AD IPVD+V N I+  A + T+ 
Sbjct: 237 WQGPLPGWTDNINGPTGIFAAVGRGVLTNMCGSSESKADIIPVDIVANMIIASASYRTSI 296

Query: 434 TKSGLTVYHCSSSTQKPFCWSMLENSVNGNLHKYPLKSAVWYPHLKFVPSLWLFRLSAIF 613
             + + V HCSS    P  W  +   +     KYP++     P   F  S  LF ++   
Sbjct: 297 NTTEIPVIHCSSGELNPLYWGHIVLFLEQFYKKYPMEQCFAVPSTYFHKSRSLFLINYYI 356

Query: 614 IHFIPAILLDMVLRVTGGRPILFRLHKNVWNSLGRLEKFIFTEWRFHNPHTIQLAKELNK 793
            H IPA + D+  R+ G R    +L+  VW  +  L  F    W F+     +  +++  
Sbjct: 357 KHHIPAAISDISARLIGKRKNNVKLYSKVWKMIETLHFFTTRGWSFNARGLPEFFEKMTP 416

Query: 794 TDSELFYIDITTIYWEDYFKNLLLGVRRYL 883
            D + +  D+  + W  Y  + ++G++++L
Sbjct: 417 ADQKEYNFDVRQVDWNSYLFDYVMGIKKFL 446


>AF025453-12|AAK31405.1|  600|Caenorhabditis elegans Hypothetical
           protein C08F1.8 protein.
          Length = 600

 Score = 32.3 bits (70), Expect = 0.93
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -1

Query: 714 PNEFQTFLCRRNSIGLPPVTLKTIS-NNIAGMKCINMADNLKSHSDGTNFKCGYQTALFN 538
           PNE +   C+   IG   + + T   +N+A + C ++ + L  H  GT+ K   + A FN
Sbjct: 8   PNEVR---CKNKIIGTSHLFIYTYQLHNVAILMCFSLINIL--HETGTSDKITREAAYFN 62

Query: 537 GYLW 526
           G  W
Sbjct: 63  GMFW 66


>AF016438-13|AAK84531.2|  402|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 96 protein.
          Length = 402

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 343 TTNHTFGCAHHETLRTDFRASPTWDRLFP*C 251
           TT   FG     +    FR +PTW R FP C
Sbjct: 14  TTGKNFGVISCRSCAAFFRRAPTWSRRFPEC 44


>U50311-4|AAA92309.1|  491|Caenorhabditis elegans Serpentine
           receptor, class sx protein34, isoform a protein.
          Length = 491

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
 Frame = +2

Query: 461 CSSSTQKPFCWSMLENSVNGNLHKYP----LKSAVWYPHLKFVPSLWLFRLSA-IFIHFI 625
           CSS+  +P  ++ L  S   ++   P    + SA+ YP  + +P +W    SA I+I FI
Sbjct: 157 CSSNEDRPRAFAALGLSFIFSIIVGPTIQLIFSAIPYPGYEIIPGIWFHLYSAPIWISFI 216

Query: 626 PAILLDMVLRV 658
             IL   V+ +
Sbjct: 217 LTILTVFVILI 227


>U50311-3|AAK68203.1|  589|Caenorhabditis elegans Serpentine
           receptor, class sx protein34, isoform b protein.
          Length = 589

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
 Frame = +2

Query: 461 CSSSTQKPFCWSMLENSVNGNLHKYP----LKSAVWYPHLKFVPSLWLFRLSA-IFIHFI 625
           CSS+  +P  ++ L  S   ++   P    + SA+ YP  + +P +W    SA I+I FI
Sbjct: 157 CSSNEDRPRAFAALGLSFIFSIIVGPTIQLIFSAIPYPGYEIIPGIWFHLYSAPIWISFI 216

Query: 626 PAILLDMVLRV 658
             IL   V+ +
Sbjct: 217 LTILTVFVILI 227


>AL132862-23|CAB60559.1|  540|Caenorhabditis elegans Hypothetical
           protein Y73F8A.30 protein.
          Length = 540

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 34/120 (28%), Positives = 50/120 (41%)
 Frame = +2

Query: 299 PQGFMMGAAKGVVRRLPLAKDNIADYIPVDVVVNEILVAGWHTATTKSGLTVYHCSSSTQ 478
           P+ +++  A  VVRR PL    I + +    V+  + V G+ TA + S       S    
Sbjct: 198 PEPWVLLEAVLVVRRKPLYY--IVNLVIPTSVITLVAVTGFFTAASTSSERREKLSLGID 255

Query: 479 KPFCWSMLENSVNGNLHKYPLKSAVWYPHLKFVPSLWLFRLSAIFIHFIPAILLDMVLRV 658
                S+L   V+  +   P  S        FVP   +F LS IFI FI  +    +L V
Sbjct: 256 SLLAMSILMMMVSEQM---PTSS-------DFVPLFGIFYLSIIFIIFIGTLFTAFILNV 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,424,379
Number of Sequences: 27780
Number of extensions: 583800
Number of successful extensions: 1366
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4379894956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)