Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_E05_e325_09.seq
         (1531 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p...    30   3.8  
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p...    30   3.8  
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p...    30   3.8  
U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.        30   3.8  
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ...    30   3.8  

>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
            protein 2, isoform a protein.
          Length = 1538

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 192  RYWFSSDAAGTHLLVFGDRFSNLRVVATQAGIIRKCP 302
            R W   D A T  + + + +  LR++A   G  +KCP
Sbjct: 1326 RVWADYDPAATGRIHYSEMYEMLRIMAPPVGFGKKCP 1362


>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
            protein 2, isoform c protein.
          Length = 1926

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 192  RYWFSSDAAGTHLLVFGDRFSNLRVVATQAGIIRKCP 302
            R W   D A T  + + + +  LR++A   G  +KCP
Sbjct: 1326 RVWADYDPAATGRIHYSEMYEMLRIMAPPVGFGKKCP 1362


>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
            protein 2, isoform b protein.
          Length = 2027

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 192  RYWFSSDAAGTHLLVFGDRFSNLRVVATQAGIIRKCP 302
            R W   D A T  + + + +  LR++A   G  +KCP
Sbjct: 1445 RVWADYDPAATGRIHYSEMYEMLRIMAPPVGFGKKCP 1481


>U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.
          Length = 1053

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 192  RYWFSSDAAGTHLLVFGDRFSNLRVVATQAGIIRKCP 302
            R W   D A T  + + + +  LR++A   G  +KCP
Sbjct: 932  RVWADYDPAATGRIHYSEMYEMLRIMAPPVGFGKKCP 968


>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
            activated calciumchannel alpha-1 subunit protein.
          Length = 2027

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 192  RYWFSSDAAGTHLLVFGDRFSNLRVVATQAGIIRKCP 302
            R W   D A T  + + + +  LR++A   G  +KCP
Sbjct: 1445 RVWADYDPAATGRIHYSEMYEMLRIMAPPVGFGKKCP 1481


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,654,779
Number of Sequences: 27780
Number of extensions: 431807
Number of successful extensions: 595
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4400652752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)