Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_E03_e309_09.seq
         (1619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21317-4|AAA62523.1|  719|Caenorhabditis elegans Hypothetical pr...    31   2.3  
Z81545-8|CAB04444.1|  327|Caenorhabditis elegans Hypothetical pr...    29   9.3  

>U21317-4|AAA62523.1|  719|Caenorhabditis elegans Hypothetical
           protein B0495.2 protein.
          Length = 719

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +2

Query: 101 TFTQXYSPTDKRRELLPRVQRARSGRRQHVAFPIAYCRPINNTLVILNSVNIINV 265
           TF   Y   DKR + +  ++R +  + +   FPI   R IN  L   N  NI+NV
Sbjct: 366 TFGVVYRGKDKRTDEIVALKRLKMEKEKE-GFPITALREINMLLKAGNHPNIVNV 419


>Z81545-8|CAB04444.1|  327|Caenorhabditis elegans Hypothetical
           protein F49H6.11 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 266 IHL*YLHCLISQVYCLLVDSTLLGMLRVDVGRSERAVRAVTVHVVY 129
           I L YL C ++++Y L         L++  GR +  V  +  HV +
Sbjct: 279 IQLSYLRCNLNELYNLFTSFNCCKFLKIVFGRVDATVHPILPHVAF 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,960,935
Number of Sequences: 27780
Number of extensions: 449694
Number of successful extensions: 879
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4712019692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)