Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_E02_e301_10.seq
         (1558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    36   0.015
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    29   2.3  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    27   9.3  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    27   9.3  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    27   9.3  
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...    27   9.3  

>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 35.9 bits (79), Expect = 0.015
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +2

Query: 263 PEIKPKTPFGQMPLLEIDGKQYAQSIAISRYLGRKYGLAGADLEED 400
           P     +P G+ P++  DG  Y +S AI  +L RKYG +    EED
Sbjct: 40  PAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPSEED 85


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 756 ISHFGAASTYPFTLGSDNTVSMVFLKIGYFSSS 658
           + H+   S YP TLGS    ++  L  GY SSS
Sbjct: 477 LRHYDTKSGYPATLGSKKITNVRDLTTGYDSSS 509


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -2

Query: 240 LSSNSCPP*ASNIRGPSPSAFTGK**KTTFGIVSFYEVIFKYLKYKSSPTTLPLVPN 70
           + S SCPP   N    SP +  G       G+VS  ++I   + Y     TLP  P+
Sbjct: 325 VQSPSCPPSPKNNAHLSPGSMGGVKVNQLLGVVSLTDII--SVLYAHMKGTLPPAPH 379


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +2

Query: 617 GMFDYLKSMLQEPTLEEKYPIFKKTIDTVLSL 712
           G+F+   S L+   L +++P+ K+T+D ++ +
Sbjct: 224 GLFEQTISCLEMSGLTKEWPVLKETVDELIDI 255


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 467 EKDEAVKAKKLAEFRETKYQFLIEKLNEILQK 562
           EKD+     KLAE  +   +F+I + N+IL K
Sbjct: 485 EKDKENGDAKLAELAKIVNRFIIRRTNDILSK 516


>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +2

Query: 344 ISRYLGRKYGLAGADLEEDFEIDQNVEFLNDIRANAAAVHYEKDEAVKAKKLA 502
           + + +G    + G DL E +EI++ V+F+     N+ A+ +  +    + K+A
Sbjct: 19  LEKEIGETVKIEG-DLVEVYEINRTVDFIKSGNYNSVALQFPDEHLADSGKVA 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,941,615
Number of Sequences: 5004
Number of extensions: 73045
Number of successful extensions: 191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 876120908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)