Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_E01_e293_09.seq
(1571 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0119 - 951492-951679,951780-951918,952023-952095,952196-95... 220 2e-57
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009... 198 1e-50
08_01_0120 - 957365-957552,957642-957780,957847-957970,958398-95... 192 6e-49
02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416 144 2e-34
08_02_1332 + 26207164-26207257,26207454-26207530,26207771-262078... 32 1.4
05_03_0258 - 11153709-11156090 31 3.3
09_02_0036 + 3217163-3217584,3217752-3218322 30 4.4
11_06_0295 + 22033367-22034947,22035030-22035137,22035230-220353... 29 7.6
>08_01_0119 -
951492-951679,951780-951918,952023-952095,952196-952218
Length = 140
Score = 220 bits (538), Expect = 2e-57
Identities = 102/140 (72%), Positives = 117/140 (83%)
Frame = +2
Query: 119 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 298
MGRMH+ GKGIS SA+PY+R+ P+W+K A DV+E I K KKG PSQIGV+LRD HG+
Sbjct: 1 MGRMHSRGKGISSSAIPYKRTPPSWVKTAAADVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60
Query: 299 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 478
V+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVES
Sbjct: 61 PLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
Query: 479 RIHRLARYYKTKSVLPPNWK 538
RIHRLARYYK LPP WK
Sbjct: 121 RIHRLARYYKRTKKLPPTWK 140
>07_03_0978 +
23099690-23100108,23100530-23100564,23100868-23100926,
23101269-23101310,23102003-23102065,23102172-23102253,
23102570-23102609,23102657-23102753
Length = 278
Score = 198 bits (482), Expect = 1e-50
Identities = 90/140 (64%), Positives = 113/140 (80%)
Frame = +2
Query: 119 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 298
MGRMH+ GKG+S S LPYRR+ P W+K +A +V+E I ++ KKG PSQIG +LRD+H V
Sbjct: 1 MGRMHSSGKGMSCSVLPYRRAAPAWVKTSASEVEEMIVRVAKKGQLPSQIGAILRDAHAV 60
Query: 299 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 478
+ VTG KILR++K+ GLAP++PEDLY+LIKKAVAMRKHLERNRKDKD+KFRLILVES
Sbjct: 61 PLAQGVTGGKILRVLKSRGLAPEVPEDLYFLIKKAVAMRKHLERNRKDKDTKFRLILVES 120
Query: 479 RIHRLARYYKTKSVLPPNWK 538
R+HRL RYY+ +P +K
Sbjct: 121 RVHRLTRYYRLAKKIPAFFK 140
>08_01_0120 -
957365-957552,957642-957780,957847-957970,958398-958486
Length = 179
Score = 192 bits (468), Expect = 6e-49
Identities = 98/149 (65%), Positives = 110/149 (73%), Gaps = 17/149 (11%)
Frame = +2
Query: 143 KGISQSALPYRRSVPTWLKLTADDV-----------------KEQIFKLGKKGLTPSQIG 271
KGIS SALPY+R+ P+WLK A DV +E I K KKG PSQIG
Sbjct: 31 KGISSSALPYKRTPPSWLKTAASDVGAFSFLSLSRLALFHLVEEMIMKAAKKGQMPSQIG 90
Query: 272 VMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDS 451
V+LRD HG+ V+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDS
Sbjct: 91 VVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDS 150
Query: 452 KFRLILVESRIHRLARYYKTKSVLPPNWK 538
KFRLILVESRIHRLARYYK LPP WK
Sbjct: 151 KFRLILVESRIHRLARYYKRTKKLPPTWK 179
>02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416
Length = 218
Score = 144 bits (349), Expect = 2e-34
Identities = 70/106 (66%), Positives = 80/106 (75%)
Frame = +2
Query: 212 DVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYL 391
+V+E I K K G SQIGV+LR HG+ V+ + KIL I+KA GLAP + EDLY+L
Sbjct: 89 EVEEMIMKAAKMGQMSSQIGVVLRHQHGIPLVKSIASSKILHILKAHGLAPKILEDLYFL 148
Query: 392 IKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPP 529
IKKAVA+RKHLERNRKDKDS FRLILVESRIHRL RYYK LPP
Sbjct: 149 IKKAVAIRKHLERNRKDKDSSFRLILVESRIHRLVRYYKRTKKLPP 194
>08_02_1332 +
26207164-26207257,26207454-26207530,26207771-26207841,
26208448-26208502,26209066-26209187,26209272-26209353,
26210070-26210160,26210759-26210982,26211294-26211413,
26211523-26211705
Length = 372
Score = 31.9 bits (69), Expect = 1.4
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 196 QPGRDTAAVRQRRLGYTLARCVHTTHIGGFLLYRRSDNPRAEXPA 62
+P TAA RQ+ + YT C HT+H+ LY+ + E A
Sbjct: 88 KPEESTAAGRQKPVLYTFINCCHTSHLN--FLYQETSQVERELNA 130
>05_03_0258 - 11153709-11156090
Length = 793
Score = 30.7 bits (66), Expect = 3.3
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 845 NINAYNLPFAIQAAQLLEGRSVRAXSLLRQLAKGGCAARRLSWVT 711
N+N YNL F + + R +L ++++ GC R++W T
Sbjct: 390 NVNTYNLIFGMLGKK---SRFTAMLEMLEEMSRSGCTPNRVTWNT 431
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 30.3 bits (65), Expect = 4.4
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 659 ITIHWPSFYNVV-TGKTLALPNLIALQH 739
I+ W F N+V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>11_06_0295 +
22033367-22034947,22035030-22035137,22035230-22035370,
22035576-22035625,22036100-22036168,22036649-22036781,
22037634-22037747,22037826-22038038,22038387-22038500,
22038768-22038900,22039304-22039416,22040204-22040284,
22040397-22040483
Length = 978
Score = 29.5 bits (63), Expect = 7.6
Identities = 22/74 (29%), Positives = 31/74 (41%)
Frame = -2
Query: 436 PITFQMFPHGDSLLDQVVQIFR*IRSKTHSFHDTQDLFTSNKSDLCNTMRVPEHDTDLGR 257
P +FQ+ +G D IF H H+T TS K++LC T+ V L
Sbjct: 749 PASFQLRHNGSCFSDIFYDIFSAWEKNDH--HETYYSLTSLKNNLCQTVNVRNIFEKLRA 806
Query: 256 SKTLFAKFEDLFLN 215
K + DL L+
Sbjct: 807 GKYFASVILDLVLD 820
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,967,885
Number of Sequences: 37544
Number of extensions: 582590
Number of successful extensions: 1441
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1441
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5081723304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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