Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_E01_e293_09.seq
         (1571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal prote...   244   2e-64
AC024826-14|AAF60791.1|  332|Caenorhabditis elegans Mrna decappi...    30   3.9  
Z79754-6|CAB02095.1|  368|Caenorhabditis elegans Hypothetical pr...    29   9.0  

>U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 13 protein.
          Length = 151

 Score =  244 bits (596), Expect = 2e-64
 Identities = 110/151 (72%), Positives = 135/151 (89%)
 Frame = +2

Query: 119 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 298
           MGRMH PGKG+++SA+PYRRSVP+W K+TA++V++QI K+ KKGL PSQIGV+LRDSHGV
Sbjct: 1   MGRMHNPGKGMAKSAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHGV 60

Query: 299 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 478
            QVR + G KI RI+K+ G+AP+LPEDLY+L+KKAVA+RKHLER+RKD DSK+RLILVES
Sbjct: 61  GQVRRLAGNKIFRILKSKGMAPELPEDLYHLVKKAVAIRKHLERSRKDIDSKYRLILVES 120

Query: 479 RIHRLARYYKTKSVLPPNWKYESSTASALVA 571
           RIHRLARYYKTK  LPP WKYES TA++LV+
Sbjct: 121 RIHRLARYYKTKRQLPPTWKYESGTAASLVS 151


>AC024826-14|AAF60791.1|  332|Caenorhabditis elegans Mrna decapping
           enzyme protein 1 protein.
          Length = 332

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 707 LALPNLIALQHIPLSPAGVIAXRP-APIALPTVAQPEWRMANCKR*YFV 850
           LA  NL  LQ I ++ + ++   P A I     A+ EW  +NC+  +FV
Sbjct: 12  LAAKNLAQLQKIDIAASKILDKMPFAAIYHIDAARKEWNQSNCEGTFFV 60


>Z79754-6|CAB02095.1|  368|Caenorhabditis elegans Hypothetical
           protein F25H2.7 protein.
          Length = 368

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 15/59 (25%), Positives = 23/59 (38%)
 Frame = -2

Query: 904 SAYWLKNELI*QKFNANFNKILTLTICHSPFRLRNCWKGDRCGPXRYYASWRKGDVLQG 728
           ++ W + + I   +       LT  + HSP    + W   RC     Y +WR  D   G
Sbjct: 278 NSVWSETDFIFHGWQKKRKDKLTFAMWHSPLIYDSPWNLTRCSKGVAYLNWRYKDSFIG 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,275,512
Number of Sequences: 27780
Number of extensions: 463319
Number of successful extensions: 1063
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4545957324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)