Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_E01_e293_09.seq
         (1571 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) simi...   248   8e-66
At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A) AtRP...   247   1e-65

>At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) similar
           to ribosomal protein S13;  PF00312 (View Sanger Pfam):
           ribosomal protein S15; identical to cDNA AtRPS13A mRNA
           for cytoplasmic ribosomal protein S13 GI:6521011
          Length = 151

 Score =  248 bits (607), Expect = 8e-66
 Identities = 118/151 (78%), Positives = 131/151 (86%)
 Frame = +2

Query: 119 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 298
           MGRMH+ GKGIS SALPY+RS P+WLK T+ DV E I K  KKGLTPSQIGV+LRDSHG+
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 299 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 478
            QV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 479 RIHRLARYYKTKSVLPPNWKYESSTASALVA 571
           RIHRLARYYK    LPP WKYES+TAS LVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151


>At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A)
           AtRPS13A mRNA for cytoplasmic ribosomal protein S13,
           Arabidopsis thaliana,AB031739
          Length = 151

 Score =  247 bits (605), Expect = 1e-65
 Identities = 118/151 (78%), Positives = 130/151 (86%)
 Frame = +2

Query: 119 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 298
           MGRMH+ GKGIS SALPY+RS P+WLK T  DV E I K  KKGLTPSQIGV+LRDSHG+
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 299 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 478
            QV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 479 RIHRLARYYKTKSVLPPNWKYESSTASALVA 571
           RIHRLARYYK    LPP WKYES+TAS LVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,186,063
Number of Sequences: 28952
Number of extensions: 431484
Number of successful extensions: 970
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4231341888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)