Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D12_e380_08.seq
         (1516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0307 - 2194796-2199274                                           33   0.59 
07_03_1136 + 24218601-24218734,24218769-24219906                       29   9.6  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    29   9.6  

>07_01_0307 - 2194796-2199274
          Length = 1492

 Score = 33.1 bits (72), Expect = 0.59
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -2

Query: 693  HYTPLKCFPSKVHRMTYNNTLPNKNSKPSCKALPRD 586
            HY  L+C P+ +HR+T    L   N  PS ++LP+D
Sbjct: 1423 HYDKLRCLPAGLHRLTNLKRLMIMNC-PSIQSLPKD 1457


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 22/71 (30%), Positives = 23/71 (32%), Gaps = 5/71 (7%)
 Frame = -3

Query: 1466 GGXXXXXXXXKGPQPPXRGXGXXGPFSXXXXXXGXGXXSPPXXGXXGPXXXP-----XGX 1302
            GG         G +PP  G G  GP S      G G   PP  G  G    P      G 
Sbjct: 94   GGGAPGPLGGGGARPPG-GGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGG 152

Query: 1301 XXGXPXTPPXG 1269
              G    PP G
Sbjct: 153  GGGALARPPGG 163


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 33/133 (24%), Positives = 38/133 (28%), Gaps = 9/133 (6%)
 Frame = +1

Query: 1105 PXXGXPGVPLXAXXSLXV-GXXXPXRXPVAPXEGMXXIXNPXLEXXXTGXGXLKKXPX-G 1278
            P    P  P     S+ + G   P   P+ P  G   +  P       G G     P  G
Sbjct: 1060 PSPPSPPPPQRENTSVGIQGGIPPLPPPLPPTLGDYGVAPPP---PSIGAGAPPPPPPPG 1116

Query: 1279 GVXGXPXXXPXGNXXGPXXP-------XXGGXXXPXPXXXXXXEKGPXXPXPLXGGWGPF 1437
            G+ G P   P G   G   P         GG   P P         P  P    GG  P 
Sbjct: 1117 GITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPP 1176

Query: 1438 XXXXXXXXPPXXP 1476
                    PP  P
Sbjct: 1177 NAHGGVAPPPPPP 1189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,713,481
Number of Sequences: 37544
Number of extensions: 547453
Number of successful extensions: 970
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4861283252
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)