Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_D12_e380_08.seq
(1516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25445| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.4
SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20) 31 3.2
SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.2
SB_14656| Best HMM Match : LEA_4 (HMM E-Value=7.3) 30 4.2
SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.4
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 29 7.4
SB_46598| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.4
SB_16524| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.4
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.4
SB_56225| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.7
>SB_25445| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 573
Score = 31.1 bits (67), Expect = 2.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 444 VSRSEMSVVETSCRVVSLSNVFSIFIMTV*TVA*SCCLT 328
+SR+ S + SCR + S++ F+++ T+ SC T
Sbjct: 5 ISRNSSSEIRPSCRALETSSLIEFFLLSAKTIVSSCLAT 43
>SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)
Length = 359
Score = 30.7 bits (66), Expect = 3.2
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 257 VRQSVRQYATLSVRQSDSMSVRQYVRQHDYATV*TVIINIENTFDNETTRQLVSTTDI-S 433
VRQSVR ++ VRQ + + R+ + T E+T + E+TR+ STT+ S
Sbjct: 261 VRQSVRVRQSVRVRQRVRVRQSESTRECESTTECESTAECESTTECESTRECESTTECES 320
Query: 434 DRE 442
RE
Sbjct: 321 TRE 323
Score = 29.5 bits (63), Expect = 7.4
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = +2
Query: 257 VRQSVRQYATLSVRQSDSMSVRQYVRQHDYATV*TVIINIENTFDNETTRQLVSTTD 427
VRQSVR ++ VRQS + R VRQ + E+T + E+T + ST +
Sbjct: 255 VRQSVRVRQSVRVRQSVRVRQRVRVRQSESTRECESTTECESTAECESTTECESTRE 311
>SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 739
Score = 30.3 bits (65), Expect = 4.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 444 VSRSEMSVVETSCRVVSLSNVFSIFIMTV*TVA*SCCLT 328
+SR S + SCR + S + F+++ T+ SC T
Sbjct: 599 ISRKSSSEIRPSCRALETSTLIEFFLLSAKTIVSSCLAT 637
>SB_14656| Best HMM Match : LEA_4 (HMM E-Value=7.3)
Length = 166
Score = 30.3 bits (65), Expect = 4.2
Identities = 17/28 (60%), Positives = 19/28 (67%)
Frame = +2
Query: 254 AVRQSVRQYATLSVRQSDSMSVRQYVRQ 337
+V QSV Q + SVRQS S SVRQ V Q
Sbjct: 85 SVSQSVSQSVSQSVRQSVSQSVRQSVSQ 112
Score = 29.9 bits (64), Expect = 5.6
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 254 AVRQSVRQYATLSVRQSDSMSVRQYVRQHDYATV*TVIINIENTFD-NETTRQLVSTTDI 430
+V QSVRQ + SVRQS S SV Q Q +V T+ I + + + R +S +I
Sbjct: 93 SVSQSVRQSVSQSVRQSVSQSVSQSFSQSVSQSVTTLHIRLNVILELRDANRFDLSKNEI 152
Query: 431 S 433
S
Sbjct: 153 S 153
>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2371
Score = 29.5 bits (63), Expect = 7.4
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = +2
Query: 254 AVRQSVRQYATLSVRQSDSMSVRQYVR 334
+VRQSVRQ SVRQS SV Q VR
Sbjct: 887 SVRQSVRQSVRQSVRQSVRQSVCQSVR 913
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 29.5 bits (63), Expect = 7.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 368 INIENTFDNETTRQLVSTTDISDRETYYIYLYINNK 475
I +EN +N T L + ++ ETYY+Y +I N+
Sbjct: 16 IELEN--NNITNTSLFLSEELEKEETYYLYYFIRNR 49
>SB_46598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1910
Score = 29.5 bits (63), Expect = 7.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 444 VSRSEMSVVETSCRVVSLSNVFSIFIMTV*TVA*SCCLT 328
+SR+ S + SCR + S++ F+++ T+ SC T
Sbjct: 72 ISRNSSSEICPSCRALETSSLIEFFLLSAKTIVSSCLAT 110
>SB_16524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 825
Score = 29.5 bits (63), Expect = 7.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 444 VSRSEMSVVETSCRVVSLSNVFSIFIMTV*TVA*SCCLT 328
+SR+ S + SCR + S++ F+++ T+ SC T
Sbjct: 42 ISRNSSSEICPSCRALETSSLIEFFLLSAKTIVSSCLAT 80
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 29.5 bits (63), Expect = 7.4
Identities = 21/63 (33%), Positives = 21/63 (33%)
Frame = -3
Query: 1433 GPQPPXRGXGXXGPFSXXXXXXGXGXXSPPXXGXXGPXXXPXGXXXGXPXTPPXGFFLRX 1254
GP PP G G P G G PP G P G G P PP G
Sbjct: 535 GPPPPGAGQGGGPP----PPGAGQGWGQPPPGAGQGGGPPPPGAGQGGP--PPPGAGQEG 588
Query: 1253 PSP 1245
P P
Sbjct: 589 PPP 591
>SB_56225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 494
Score = 29.1 bits (62), Expect = 9.7
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 444 VSRSEMSVVETSCRVVSLSNVFSIFIMTV*TVA*SCCLT 328
+S + S + SCRV+ S++ F+++ T+ SC T
Sbjct: 39 ISHNSSSEICPSCRVLETSSLIEFFLLSAKTIVSSCLAT 77
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,420,730
Number of Sequences: 59808
Number of extensions: 635001
Number of successful extensions: 2860
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2852
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4918128563
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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