Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D12_e380_08.seq
         (1516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U22831-6|AAK20068.1|  579|Caenorhabditis elegans Hypothetical pr...    33   0.70 
Z73912-1|CAA98145.1|  465|Caenorhabditis elegans Hypothetical pr...    32   0.92 
Z14067-1|CAA78450.1|  465|Caenorhabditis elegans putative integr...    32   0.92 
Z14066-1|CAA78449.1|  465|Caenorhabditis elegans putative integr...    32   0.92 
Z78018-8|CAB01450.2|  405|Caenorhabditis elegans Hypothetical pr...    29   8.6  
Z78014-3|CAB01430.2|  405|Caenorhabditis elegans Hypothetical pr...    29   8.6  

>U22831-6|AAK20068.1|  579|Caenorhabditis elegans Hypothetical
           protein F47D12.7 protein.
          Length = 579

 Score = 32.7 bits (71), Expect = 0.70
 Identities = 17/66 (25%), Positives = 34/66 (51%)
 Frame = -3

Query: 749 NNKSLISTYLLLFYDHYVNIIHH*NAFQAKFIE*PTIIPYRIKILNHLVRHFHVTVPRNL 570
           N + +   YLL FY +Y  ++     F +KF +      +RI++++    HF +T+P+  
Sbjct: 60  NEEVIFDRYLLSFYSNYFRVL-----FSSKFRD-SNSTTHRIRLISASDLHFLLTIPKAF 113

Query: 569 RHYVRP 552
              ++P
Sbjct: 114 EQGIKP 119


>Z73912-1|CAA98145.1|  465|Caenorhabditis elegans Hypothetical
           protein ZK524.1 protein.
          Length = 465

 Score = 32.3 bits (70), Expect = 0.92
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 180 LSILCHTFCYLYSLLEWEQCY 242
           L ++C TFCY  S+  WEQ Y
Sbjct: 444 LPVICGTFCYFSSMFFWEQLY 464


>Z14067-1|CAA78450.1|  465|Caenorhabditis elegans putative integral
           membrane protein protein.
          Length = 465

 Score = 32.3 bits (70), Expect = 0.92
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 180 LSILCHTFCYLYSLLEWEQCY 242
           L ++C TFCY  S+  WEQ Y
Sbjct: 444 LPVICGTFCYFSSMFFWEQLY 464


>Z14066-1|CAA78449.1|  465|Caenorhabditis elegans putative integral
           membrane protein protein.
          Length = 465

 Score = 32.3 bits (70), Expect = 0.92
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 180 LSILCHTFCYLYSLLEWEQCY 242
           L ++C TFCY  S+  WEQ Y
Sbjct: 444 LPVICGTFCYFSSMFFWEQLY 464


>Z78018-8|CAB01450.2|  405|Caenorhabditis elegans Hypothetical
           protein W07G4.6 protein.
          Length = 405

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 19/83 (22%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
 Frame = +2

Query: 290 SVRQSDSMSVRQYVRQHDYATV*TV---IINIENTFDNETTRQLV---STTDISDRETYY 451
           ++R S S S+  Y   H  A +  +   ++++  +F +  T + +   STT  SD   + 
Sbjct: 134 TMRLSTSQSIDDYTTYHRKAAIMIIPIFVVSLSTSFYSSVTNRYMLNDSTTFYSDSVVHQ 193

Query: 452 IYLYINNKYCNYNSLLLILYTSV 520
           +  +I+   C  ++L +++Y +V
Sbjct: 194 LAPFIDFIGCIASALAVVIYVTV 216


>Z78014-3|CAB01430.2|  405|Caenorhabditis elegans Hypothetical
           protein W07G4.6 protein.
          Length = 405

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 19/83 (22%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
 Frame = +2

Query: 290 SVRQSDSMSVRQYVRQHDYATV*TV---IINIENTFDNETTRQLV---STTDISDRETYY 451
           ++R S S S+  Y   H  A +  +   ++++  +F +  T + +   STT  SD   + 
Sbjct: 134 TMRLSTSQSIDDYTTYHRKAAIMIIPIFVVSLSTSFYSSVTNRYMLNDSTTFYSDSVVHQ 193

Query: 452 IYLYINNKYCNYNSLLLILYTSV 520
           +  +I+   C  ++L +++Y +V
Sbjct: 194 LAPFIDFIGCIASALAVVIYVTV 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,367,405
Number of Sequences: 27780
Number of extensions: 495153
Number of successful extensions: 957
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4348758262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)