Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D12_e380_08.seq
         (1516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          29   0.14 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      29   0.14 
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          29   0.14 
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    25   1.7  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   6.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   6.9  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   6.9  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 28.7 bits (61), Expect = 0.14
 Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
 Frame = -3

Query: 755 GVNNKSLISTYLLLFYDHYVNIIHH*NAFQAKFIE*PTIIPYRIKILNHLVRHFHVTV-- 582
           GV+ +S+    L+ ++DH+ +++++  + Q+      T+I  R   LNH    +H+ V  
Sbjct: 447 GVSIESVTVDKLITYFDHFESMLNNGVSIQSHAKAKNTMIKARQYRLNHKPFTYHIVVNS 506

Query: 581 PRNLRHYVR 555
            +N++  VR
Sbjct: 507 DKNVKGMVR 515


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 28.7 bits (61), Expect = 0.14
 Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
 Frame = -3

Query: 755 GVNNKSLISTYLLLFYDHYVNIIHH*NAFQAKFIE*PTIIPYRIKILNHLVRHFHVTV-- 582
           GV+ +S+    L+ ++DH+ +++++  + Q+      T+I  R   LNH    +H+ V  
Sbjct: 447 GVSIESVTVDKLITYFDHFESMLNNGVSIQSHAKAKNTMIKARQYRLNHKPFTYHIVVNS 506

Query: 581 PRNLRHYVR 555
            +N++  VR
Sbjct: 507 DKNVKGMVR 515


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 28.7 bits (61), Expect = 0.14
 Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
 Frame = -3

Query: 755 GVNNKSLISTYLLLFYDHYVNIIHH*NAFQAKFIE*PTIIPYRIKILNHLVRHFHVTV-- 582
           GV+ +S+    L+ ++DH+ +++++  + Q+      T+I  R   LNH    +H+ V  
Sbjct: 73  GVSIESVTVDKLITYFDHFESMLNNGVSIQSHAKAKNTMIKARQYRLNHKPFTYHIVVNS 132

Query: 581 PRNLRHYVR 555
            +N++  VR
Sbjct: 133 DKNVKGMVR 141


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 389 DNETTRQLVSTTDISDRETYYIYLYINNKYCNYNSLL 499
           + E +R+    + +S+   Y  Y   NN Y NYN  L
Sbjct: 72  ERERSREPKIISSLSNNYNYSNYNNYNNNYNNYNKKL 108


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 389 DNETTRQLVSTTDISDRETYYIYLYINNKYCNYNS 493
           + E +++    + +S+   Y  Y   NN Y NYN+
Sbjct: 305 ERERSKEPKIISSLSNNYKYSNYNNYNNNYNNYNN 339


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 368  INIENTFDNETTRQLVSTTDISDRETY 448
            +N+E    NE   +L+ T  ++DR  Y
Sbjct: 1081 LNVETAKTNEEMWELIDTEKLTDRLPY 1107


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 431 SDRETYYIYLYINNKYCNYNSLLLILYT 514
           ++R+  Y  +     YC+ NSL+  +YT
Sbjct: 30  AERQEEYRCVICERVYCSRNSLMTHIYT 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 335,499
Number of Sequences: 438
Number of extensions: 6872
Number of successful extensions: 24
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52993875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)