Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D12_e380_08.seq
         (1516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65140.1 68414.m07385 ubiquitin carboxyl-terminal hydrolase f...    35   0.16 
At5g61520.1 68418.m07719 hexose transporter, putative similar to...    29   8.0  

>At1g65140.1 68414.m07385 ubiquitin carboxyl-terminal hydrolase
           family protein contains Pfam profile PF00443: Ubiquitin
           carboxyl-terminal hydrolase
          Length = 331

 Score = 34.7 bits (76), Expect = 0.16
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +3

Query: 594 EVPYKMV*NFYSVRYYCRSFDELCLESILMVYNVNIMIIEKK*ICRNKRFVINPIEHLPG 773
           E  Y ++ N  S+R Y  +F E   E+I+    +N+ ++  K  C  + +V   I +LP 
Sbjct: 154 ETSYGIIINANSLRVYKSAFKEFTFENIIKASMINVKMLCDKEGCGKRNYVDTMISNLPS 213

Query: 774 XY 779
            +
Sbjct: 214 AF 215


>At5g61520.1 68418.m07719 hexose transporter, putative similar to
           hexose carrier protein hex6 {Ricinus communis}
           SP|Q07423; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 514

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = +2

Query: 467 NNKYCNYNSLLLILYTSVE*YFSAKYVYVVLHSVSDSEALSRGSALQDGLEFLFGKVL 640
           NN YC +NS LL  +TS   Y S     ++  SV+ S    + S    G+ FL G  L
Sbjct: 77  NNHYCLFNSQLLTSFTS-SLYVSGLIATLLASSVTRSWG-RKPSIFLGGVSFLAGAAL 132


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,428,627
Number of Sequences: 28952
Number of extensions: 434687
Number of successful extensions: 837
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4048208640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)