Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D11_e372_07.seq
         (1580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61948-2|AAB03143.2|  345|Caenorhabditis elegans Collagen protei...    30   5.2  
M25480-1|AAA27986.1|  326|Caenorhabditis elegans collagen protein.     30   5.2  
AL034543-4|CAA22518.1|  323|Caenorhabditis elegans Hypothetical ...    29   9.1  

>U61948-2|AAB03143.2|  345|Caenorhabditis elegans Collagen protein 14
            protein.
          Length = 345

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 15/45 (33%), Positives = 16/45 (35%)
 Frame = -3

Query: 1206 GAPGPSXXXPXXXXXPXXGTEGXNXGPXXXPXPXSDPXXRXXPGE 1072
            G PGP    P     P    +G   GP   P P   P     PGE
Sbjct: 277  GRPGPPGQ-PGPAGPPGENGKGGGQGPSGLPGPPGQPGQNGAPGE 320


>M25480-1|AAA27986.1|  326|Caenorhabditis elegans collagen protein.
          Length = 326

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 15/45 (33%), Positives = 16/45 (35%)
 Frame = -3

Query: 1206 GAPGPSXXXPXXXXXPXXGTEGXNXGPXXXPXPXSDPXXRXXPGE 1072
            G PGP    P     P    +G   GP   P P   P     PGE
Sbjct: 258  GRPGPPGQ-PGPAGPPGENGKGGGQGPSGLPGPPGQPGQNGAPGE 301


>AL034543-4|CAA22518.1|  323|Caenorhabditis elegans Hypothetical
            protein Y81G3A.5 protein.
          Length = 323

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 17/66 (25%), Positives = 20/66 (30%)
 Frame = +1

Query: 1198 GRPXXXXXXXXRDPTGXLAAXXXXPSGXPXXXXPLGXXPTTGNSGXAGRXXWRXAXPPXP 1377
            G+P           +G +      P G P    P G    TGN G  G        P  P
Sbjct: 122  GQPGTAGISESHSSSGCITCPAG-PMGSPGPDGPPGVPGATGNPGSLGESSLGAGSPGPP 180

Query: 1378 GXXXXP 1395
            G    P
Sbjct: 181  GGVGPP 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,183,004
Number of Sequences: 27780
Number of extensions: 398169
Number of successful extensions: 867
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4577094018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)