Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D11_e372_07.seq
         (1580 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containi...    30   3.7  
At4g38180.1 68417.m05390 far-red impaired responsive protein, pu...    29   8.4  

>At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 867

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -1

Query: 794 GDIVFFLIHLIXXYVYIVTYLK*THDYCNNWLVIIISNRQTICMTIGYN 648
           GD+ + LIH++   ++       THD  +N LV+ +SN  T+   +  N
Sbjct: 113 GDVFWVLIHILLSSIH-------THDRASNLLVMFVSNNPTLIPNVMVN 154


>At4g38180.1 68417.m05390 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
           contains Pfam:PF03101 domain: FAR1 family and PF04434:
           SWIM zinc finger
          Length = 788

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
 Frame = +2

Query: 626 NAVAVLQYYILS-------SCILFDDLKLLXPTNYYNNHVFILNTLQCIRXXILNELKKK 784
           N + +  YYIL        S ++FDD  L    NY  +H    NTL+      + E  K 
Sbjct: 616 NLLTLPPYYILKRWTRNAKSSVIFDDYNLHAYANYLESHTVRYNTLRHKASNFVQEAGKS 675

Query: 785 QY 790
            Y
Sbjct: 676 LY 677


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,166,342
Number of Sequences: 28952
Number of extensions: 313111
Number of successful extensions: 363
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4260257664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)