Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D10_e364_08.seq
         (1502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce...    85   2e-17
SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein S30|S...    51   4e-07
SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein S30|Schizosa...    51   4e-07
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    29   2.2  
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   2.9  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    27   6.7  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    27   8.9  

>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 56

 Score = 85.4 bits (202), Expect = 2e-17
 Identities = 36/54 (66%), Positives = 41/54 (75%)
 Frame = +3

Query: 624 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCXREYAHDIGFKK 785
           M H N+W+SHPR+YG+GSR C     R GLIRKYGLNI RQ  REYA+DIGF K
Sbjct: 1   MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVK 54


>SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 61

 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 28/60 (46%), Positives = 31/60 (51%)
 Frame = +1

Query: 301 GKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVNVVQTFGRRRGPNSNS 480
           GKVHGSLARAGKVK QTP                  + Y RRFVNV    G +R  N +S
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61


>SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 61

 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 28/60 (46%), Positives = 31/60 (51%)
 Frame = +1

Query: 301 GKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVNVVQTFGRRRGPNSNS 480
           GKVHGSLARAGKVK QTP                  + Y RRFVNV    G +R  N +S
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 118 THVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAP 231
           T   D+N QES+  +     LL +VES    L MC AP
Sbjct: 120 TEAGDINRQESVSMVPP---LLLNVESHHKVLDMCAAP 154


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 558 SSFFFFFLKQKRCYICIVVLFTELILRVRVGSTTAAEGLDNV 433
           +SFF+ FL   R  +C + +FTE+       ST + E LD +
Sbjct: 127 TSFFYAFLNI-RTLVCGITIFTEIARYSMYHSTLSVEKLDEM 167


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 576 SCFPLLGLEKTN*FYIMGHANIWYSHPRRY 665
           S + + G +K N FY +   N WY    RY
Sbjct: 230 SSWDIYGFKKANQFYTVDQYNTWYGPYSRY 259


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 485 FYELELGPRRRPKVWTTFTNLLLYWILRLARPVLFFFFCC 366
           FYEL      RP + +    LL+ +++  ++ +L FFF C
Sbjct: 6   FYELYNIKNIRPLIPSFHVCLLIMFLILYSQEILSFFFMC 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,489,042
Number of Sequences: 5004
Number of extensions: 78607
Number of successful extensions: 189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 840441776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)