Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D10_e364_08.seq
         (1502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0486 + 19577507-19577568,19578119-19578218,19581128-195812...    91   2e-18
11_06_0483 + 24118047-24118108,24118952-24119051,24119330-24119338     90   4e-18
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228...    90   4e-18
06_01_0507 + 3655570-3655573,3655648-3655832                           67   3e-11
10_08_0704 - 20018477-20018542,20018693-20018704,20018731-200189...    29   7.2  

>12_02_0486 +
           19577507-19577568,19578119-19578218,19581128-19581214,
           19581852-19581914
          Length = 103

 Score = 91.1 bits (216), Expect = 2e-18
 Identities = 43/79 (54%), Positives = 47/79 (59%)
 Frame = +3

Query: 624 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCXREYAHDIGFKKLD*AKI 803
           MGH+N+W SHP+ YG GSR CR C N HGLIRKYGL  CRQC R  A DIGF K+  A  
Sbjct: 1   MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIKVIHAAQ 60

Query: 804 **IFNVSXXXXXTRGGPXY 860
             I          R GP Y
Sbjct: 61  AMISAYDKQGFKNRRGPGY 79


>11_06_0483 + 24118047-24118108,24118952-24119051,24119330-24119338
          Length = 56

 Score = 90.2 bits (214), Expect = 4e-18
 Identities = 37/54 (68%), Positives = 40/54 (74%)
 Frame = +3

Query: 624 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCXREYAHDIGFKK 785
           MGH+N+W SHP+ YG GSR CR C N HGLIRKYGL  CRQC R  A DIGF K
Sbjct: 1   MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 54


>03_06_0123 -
           31821915-31822094,31822187-31822324,31822413-31822817,
           31822897-31823212,31823305-31823543,31823800-31823903,
           31823987-31824145,31824326-31824510,31825318-31825427,
           31826900-31826947,31827047-31827241,31827354-31827422,
           31829521-31829620,31829879-31829940
          Length = 769

 Score = 90.2 bits (214), Expect = 4e-18
 Identities = 37/54 (68%), Positives = 40/54 (74%)
 Frame = +3

Query: 624 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCXREYAHDIGFKK 785
           MGH+N+W SHP+ YG GSR CR C N HGLIRKYGL  CRQC R  A DIGF K
Sbjct: 1   MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 54


>06_01_0507 + 3655570-3655573,3655648-3655832
          Length = 62

 Score = 67.3 bits (157), Expect = 3e-11
 Identities = 32/59 (54%), Positives = 37/59 (62%)
 Frame = +1

Query: 301 GKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVNVVQTFGRRRGPNSN 477
           GKVHGSLARAGKV+GQTP                  +QYNRRFV  V  FG++RGPNS+
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60


>10_08_0704 -
           20018477-20018542,20018693-20018704,20018731-20018927,
           20018928-20018999,20019159-20021289
          Length = 825

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 124 VLDVNGQESIGDIK--NRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTE 273
           +L+++     G I   N+L+ L+D         +CG PL  SC  S L+S E
Sbjct: 725 ILNLSNNHLSGKIPTGNQLQTLSDPSIYHNNYGLCGFPLNISCTSSSLASDE 776


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,853,511
Number of Sequences: 37544
Number of extensions: 569749
Number of successful extensions: 1198
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4814874820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)