Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_D10_e364_08.seq
(1502 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80953-1|AAB52557.2| 56|Caenorhabditis elegans Ribosomal prote... 99 4e-21
U53148-5|AAB37076.1| 130|Caenorhabditis elegans Ribosomal prote... 80 4e-15
AY099352-1|AAM34494.1| 891|Caenorhabditis elegans gamma-tubulin... 33 0.53
AF040644-2|AAN63399.1| 963|Caenorhabditis elegans Gamma-tubulin... 33 0.53
AF040644-1|AAB94969.2| 891|Caenorhabditis elegans Gamma-tubulin... 33 0.53
Z72504-3|CAA96605.1| 449|Caenorhabditis elegans Hypothetical pr... 33 0.70
AF273784-1|AAG15133.1| 459|Caenorhabditis elegans nuclear recep... 33 0.70
U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical pr... 30 4.9
U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defecti... 29 6.5
U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defecti... 29 6.5
U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defecti... 29 6.5
AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity... 29 6.5
>U80953-1|AAB52557.2| 56|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 29 protein.
Length = 56
Score = 99 bits (238), Expect = 4e-21
Identities = 39/56 (69%), Positives = 47/56 (83%)
Frame = +3
Query: 624 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCXREYAHDIGFKKLD 791
MG N+W+SHPR++G GSRSCR C+ HGLIRKYGL++CR+C RE A DIGFKKLD
Sbjct: 1 MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKLD 56
>U53148-5|AAB37076.1| 130|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 30 protein.
Length = 130
Score = 80.2 bits (189), Expect = 4e-15
Identities = 51/135 (37%), Positives = 69/135 (51%), Gaps = 5/135 (3%)
Frame = +1
Query: 91 MQLHIRG--QSTHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSEL- 261
MQ+ + G +TH LDV+ ++ IK + EE ++S L + + E
Sbjct: 1 MQIFLLGLDNTTHTLDVDASTTLSAIKGVIGA-----GEEFSISYGSKVLSEELTLGECQ 55
Query: 262 --SSTELDLTVPLLGGKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVN 435
S + L + LLGGKVHGSLARAGKV+ QTP +QY RR+VN
Sbjct: 56 IESLSTLSVNGRLLGGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGRAFRRVQYTRRYVN 115
Query: 436 VVQTFGRRRGPNSNS 480
V G++RGPNSNS
Sbjct: 116 VASGPGKKRGPNSNS 130
>AY099352-1|AAM34494.1| 891|Caenorhabditis elegans gamma-tubulin
ring protein GRIP-1 protein.
Length = 891
Score = 33.1 bits (72), Expect = 0.53
Identities = 23/67 (34%), Positives = 31/67 (46%)
Frame = -3
Query: 657 VGVNTRYLRDP*CKISLFSRDPKEGNTIKRELVSSFFFFFLKQKRCYICIVVLFTELILR 478
+G R LRD C I + R E +K ++ S FFFL R + + E
Sbjct: 546 LGQILRILRDVVCGIVM--RMVMETGRLKEHVLKSTSFFFLSDPRFTTTLYTIIKEASQG 603
Query: 477 VRVGSTT 457
+RVGSTT
Sbjct: 604 LRVGSTT 610
>AF040644-2|AAN63399.1| 963|Caenorhabditis elegans Gamma-tubulin
interacting proteinprotein 1, isoform b protein.
Length = 963
Score = 33.1 bits (72), Expect = 0.53
Identities = 23/67 (34%), Positives = 31/67 (46%)
Frame = -3
Query: 657 VGVNTRYLRDP*CKISLFSRDPKEGNTIKRELVSSFFFFFLKQKRCYICIVVLFTELILR 478
+G R LRD C I + R E +K ++ S FFFL R + + E
Sbjct: 546 LGQILRILRDVVCGIVM--RMVMETGRLKEHVLKSTSFFFLSDPRFTTTLYTIIKEASQG 603
Query: 477 VRVGSTT 457
+RVGSTT
Sbjct: 604 LRVGSTT 610
>AF040644-1|AAB94969.2| 891|Caenorhabditis elegans Gamma-tubulin
interacting proteinprotein 1, isoform a protein.
Length = 891
Score = 33.1 bits (72), Expect = 0.53
Identities = 23/67 (34%), Positives = 31/67 (46%)
Frame = -3
Query: 657 VGVNTRYLRDP*CKISLFSRDPKEGNTIKRELVSSFFFFFLKQKRCYICIVVLFTELILR 478
+G R LRD C I + R E +K ++ S FFFL R + + E
Sbjct: 546 LGQILRILRDVVCGIVM--RMVMETGRLKEHVLKSTSFFFLSDPRFTTTLYTIIKEASQG 603
Query: 477 VRVGSTT 457
+RVGSTT
Sbjct: 604 LRVGSTT 610
>Z72504-3|CAA96605.1| 449|Caenorhabditis elegans Hypothetical
protein C29E6.5 protein.
Length = 449
Score = 32.7 bits (71), Expect = 0.70
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 684 CRACSNRHGLIRKYGLNICRQCXREYAHDIGFKK 785
CR C R+ + +G++ICR C + + KK
Sbjct: 47 CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 80
>AF273784-1|AAG15133.1| 459|Caenorhabditis elegans nuclear receptor
NHR-43 protein.
Length = 459
Score = 32.7 bits (71), Expect = 0.70
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 684 CRACSNRHGLIRKYGLNICRQCXREYAHDIGFKK 785
CR C R+ + +G++ICR C + + KK
Sbjct: 57 CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 90
>U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical
protein C16C8.4 protein.
Length = 226
Score = 29.9 bits (64), Expect = 4.9
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +1
Query: 118 THVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSE 258
++ ++ ++++ DIKN + D+ LS G LED C + +
Sbjct: 164 SYAFKIHREDTVFDIKNDIEHRHDIPQHSYWLSFSGKRLEDHCSIGD 210
>U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defective
protein 1, isoformc protein.
Length = 721
Score = 29.5 bits (63), Expect = 6.5
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 154 GDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARA 330
G ++ + L A++ES + + + D+ +++ L L +L PL+ ++HG L A
Sbjct: 528 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 587
Query: 331 GKV 339
V
Sbjct: 588 ASV 590
>U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defective
protein 1, isoformb protein.
Length = 942
Score = 29.5 bits (63), Expect = 6.5
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 154 GDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARA 330
G ++ + L A++ES + + + D+ +++ L L +L PL+ ++HG L A
Sbjct: 726 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 785
Query: 331 GKV 339
V
Sbjct: 786 ASV 788
>U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defective
protein 1, isoforma protein.
Length = 987
Score = 29.5 bits (63), Expect = 6.5
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 154 GDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARA 330
G ++ + L A++ES + + + D+ +++ L L +L PL+ ++HG L A
Sbjct: 794 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 853
Query: 331 GKV 339
V
Sbjct: 854 ASV 856
>AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity
specification proteinSYD-1 protein.
Length = 942
Score = 29.5 bits (63), Expect = 6.5
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 154 GDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARA 330
G ++ + L A++ES + + + D+ +++ L L +L PL+ ++HG L A
Sbjct: 726 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 785
Query: 331 GKV 339
V
Sbjct: 786 ASV 788
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,558,447
Number of Sequences: 27780
Number of extensions: 470216
Number of successful extensions: 1011
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4329178048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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