Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D10_e364_08.seq
         (1502 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   1.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   1.7  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   5.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   5.2  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    23   9.0  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    23   9.0  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    23   9.0  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    23   9.0  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    23   9.0  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    23   9.0  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    23   9.0  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    23   9.0  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   9.0  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   9.0  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   9.0  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   9.0  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   9.0  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 301 HQEEAL*GRAQLMKALTQDMSPQGAHRT*TESPPHS 194
           H+EE L   ++ + A+   ++ Q AH + +E   HS
Sbjct: 585 HREEDLGSESKTINAVVNALAEQAAHASASEESVHS 620


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 301 HQEEAL*GRAQLMKALTQDMSPQGAHRT*TESPPHS 194
           H+EE L   ++ + A+   ++ Q AH + +E   HS
Sbjct: 553 HREEDLGSESKTINAVVNALAEQAAHASASEESVHS 588


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 336 SQRPDAQSRETAKEKEEDRT 395
           ++R   + RET+KE+ +DRT
Sbjct: 52  NEREYRKYRETSKERSQDRT 71


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 336 SQRPDAQSRETAKEKEEDRT 395
           ++R   + RET+KE+ +DRT
Sbjct: 52  NEREYRKYRETSKERSQDRT 71


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 336 SQRPDAQSRETAKEKEEDRT 395
           ++R   + RET+KE+  DRT
Sbjct: 52  NEREYQKYRETSKERSRDRT 71


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 336 SQRPDAQSRETAKEKEEDRT 395
           ++R   + RET+KE+  DRT
Sbjct: 52  NEREYQKYRETSKERSRDRT 71


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 336 SQRPDAQSRETAKEKEEDRT 395
           ++R   + RET+KE+  DRT
Sbjct: 52  NEREYQKYRETSKERSRDRT 71


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 336 SQRPDAQSRETAKEKEEDRT 395
           ++R   + RET+KE+  DRT
Sbjct: 52  NEREYQKYRETSKERSRDRT 71


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 336 SQRPDAQSRETAKEKEEDRT 395
           ++R   + RET+KE+  DRT
Sbjct: 52  NEREYQKYRETSKERSRDRT 71


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 336 SQRPDAQSRETAKEKEEDRT 395
           ++R   + RET+KE+  DRT
Sbjct: 52  NEREYQKYRETSKERSRDRT 71


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 336 SQRPDAQSRETAKEKEEDRT 395
           ++R   + RET+KE+  DRT
Sbjct: 52  NEREYQKYRETSKERSRDRT 71


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 336 SQRPDAQSRETAKEKEEDRT 395
           ++R   + RET+KE+  DRT
Sbjct: 52  NEREYRKYRETSKERSRDRT 71


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 336 SQRPDAQSRETAKEKEEDRT 395
           ++R   + RET+KE+  DRT
Sbjct: 51  NEREYRKYRETSKERSRDRT 70


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 336 SQRPDAQSRETAKEKEEDRT 395
           ++R   + RET+KE+  DRT
Sbjct: 52  NEREYRKYRETSKERSRDRT 71


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 336 SQRPDAQSRETAKEKEEDRT 395
           ++R   + RET+KE+  DRT
Sbjct: 52  NEREYRKYRETSKERSRDRT 71


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 336 SQRPDAQSRETAKEKEEDRT 395
           ++R   + RET+KE+  DRT
Sbjct: 52  NEREYRKYRETSKERSRDRT 71


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 336 SQRPDAQSRETAKEKEEDRT 395
           ++R   + RET+KE+  DRT
Sbjct: 52  NEREYRKYRETSKERSRDRT 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 319,228
Number of Sequences: 438
Number of extensions: 6475
Number of successful extensions: 42
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52515375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)