Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D09_e356_07.seq
         (1490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    29   2.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   3.8  
SPAP11E10.01 |||ornithine cyclodeaminase family |Schizosaccharom...    27   5.0  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   5.0  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    27   6.7  
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    27   6.7  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +3

Query: 696 QKAKRTNQSLYYSETKX*LKIDLVLEEETGYSELMVXSIFAFRDTCQRD 842
           +K  RTN SL Y + K     +L+ EE  G+S LM+    A   TC R+
Sbjct: 152 RKIVRTNTSLLYRQKK----FNLLREESEGFSHLMINFFDAL--TCLRN 194


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/44 (29%), Positives = 15/44 (34%)
 Frame = +2

Query: 1358 GGXXPXXPXTXGPPPLGXXRPXXXGXXXPPPPGXAXXPPXXPXP 1489
            GG  P  P +  P       P       PPPP  +  PP    P
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP 1722



 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/43 (30%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
 Frame = +2

Query: 1370 PXXPXTXGPPPLGXXRPXXXGXXXPPPPGX---AXXPPXXPXP 1489
            P  P +  PP +    P       PPPP        PP  P P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = +2

Query: 1370 PXXPXTXGPPPLGXXRPXXXGXXXPPPPGXAXXPPXXPXP 1489
            P  P +  PPP     P       PPPP  A   P  P P
Sbjct: 1708 PPPPMSVPPPPSAPPMP-AGPPSAPPPPLPASSAPSVPNP 1746


>SPAP11E10.01 |||ornithine cyclodeaminase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 330

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 384 ILIITSNKMIEDFLHIHCKVGVLR 455
           +LII S K+ E  +H HC V  +R
Sbjct: 135 LLIIGSGKVAEKLIHAHCSVRPIR 158


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 166 FKYFYHLI*LTINYNYKIN 110
           F  F+HL+ LT NY+Y IN
Sbjct: 145 FGLFHHLMFLTTNYSYTIN 163


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 572 YGHGGGEYIICYKHIYHNTIIQG 504
           YG GG EY+   +H Y  T+I G
Sbjct: 350 YGRGGEEYLFFTQHGYVPTVIPG 372


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -2

Query: 664 VWEATVKIKHFFHLQTLLVSTITNLWEKSKRMDMAVVNILFVINIFTIILLSR 506
           +WE++  I+H FH    +  +     +KSK   +A+ N  F   I  ++  SR
Sbjct: 317 IWESSPLIRHAFHYDDSIYLSYCPELKKSKHKGIALAN-SFSFRIAKVLKKSR 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,478,590
Number of Sequences: 5004
Number of extensions: 80505
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 832513080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)