Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_D09_e356_07.seq
(1490 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.004
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 36 0.083
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 35 0.19
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 35 0.19
SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056) 34 0.25
SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37) 32 1.4
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 31 1.8
SB_33909| Best HMM Match : FH2 (HMM E-Value=0) 31 2.4
SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.4
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.4
SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4) 31 3.1
SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.1
SB_34887| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.95) 30 4.1
SB_23149| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.5
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.5
SB_10571| Best HMM Match : Cas1p (HMM E-Value=1.8e-26) 30 5.5
SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069) 29 7.2
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.2
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.2
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 29 9.6
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2) 29 9.6
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 40.3 bits (90), Expect = 0.004
Identities = 28/88 (31%), Positives = 30/88 (34%), Gaps = 2/88 (2%)
Frame = +2
Query: 1232 GTGXPXXXXXXXXXXPXPPAPGXXXRFXXXXPX-XXPXPXXAXGGXXPXXPXTXGPPPLG 1408
G+ P P PP PG P P GG P P PPP G
Sbjct: 906 GSESPSASPPGGSVPPPPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPP----PPPGG 961
Query: 1409 XXRPXXXGXX-XPPPPGXAXXPPXXPXP 1489
P G PPPPG + PP P P
Sbjct: 962 SAPPPGGGAPPLPPPPGGSAPPPPPPPP 989
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 35.9 bits (79), Expect = 0.083
Identities = 30/119 (25%), Positives = 32/119 (26%), Gaps = 5/119 (4%)
Frame = +2
Query: 1148 FXENXEKKKPXGPXXPLGGGHXXGVPXXGTGXPXXX-XXXXXXXPXPPAPGXXXRFXXXX 1324
F + KKK P + G P P PP P
Sbjct: 64 FFSSLFKKKKQAPTPQTQASTAPPLVPAGVEAPTPTPMVAQSVAPTPPPPPRAPETPSQA 123
Query: 1325 PXXXPXPXX----AXGGXXPXXPXTXGPPPLGXXRPXXXGXXXPPPPGXAXXPPXXPXP 1489
P P P A P P T GPPP P G PPP A P P
Sbjct: 124 PSPPPPPTSPATRAPPPPPPIAPATGGPPPPPPIAPATGGPPPPPPIAPAATVPAPAVP 182
Score = 31.9 bits (69), Expect = 1.4
Identities = 25/82 (30%), Positives = 25/82 (30%), Gaps = 11/82 (13%)
Frame = +2
Query: 1277 PXPPAPGXXXRFXXXXPXXXPXPXXAXGGXXP---XXPXTXGPPPLGXXRPXXX------ 1429
P PP P P P A GG P P T GPPP P
Sbjct: 124 PSPPPPPTSP--ATRAPPPPPPIAPATGGPPPPPPIAPATGGPPPPPPIAPAATVPAPAV 181
Query: 1430 --GXXXPPPPGXAXXPPXXPXP 1489
PPPP PP P P
Sbjct: 182 PLAAASPPPPSGGPPPPPPPPP 203
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 34.7 bits (76), Expect = 0.19
Identities = 40/156 (25%), Positives = 46/156 (29%), Gaps = 4/156 (2%)
Frame = +2
Query: 1028 GWLXVGPXPGRXXPGGRXKXLGPP*PGVXXFLPXXXGXGEFXENXEKKKPXG-PXXPLGG 1204
G L G P + P G K G G P +N P G P P G
Sbjct: 95 GGLFAGGMP-KLRPAGERKAAGAGPRGPALKPPGFRTTAPPPKNSSPPPPFGAPPPPDRG 153
Query: 1205 GHXXGVPXXGTGXPXXXXXXXXXXPXPPAPGXXXRFXXXXPXXX---PXPXXAXGGXXPX 1375
G P G+ P P PP+ G F P P G P
Sbjct: 154 GQLAKKPSQGSFPPPPPMGK----PPPPS-GNKPTFGNSRTSTNGPPPPPHSRHGSAPPP 208
Query: 1376 XPXTXGPPPLGXXRPXXXGXXXPPPPGXAXXPPXXP 1483
+ GPPP R PPP G + P P
Sbjct: 209 PERSSGPPPPPPGRGPSQRSLAPPPTGSSRPLPAPP 244
Score = 29.5 bits (63), Expect = 7.2
Identities = 37/145 (25%), Positives = 38/145 (26%), Gaps = 4/145 (2%)
Frame = +2
Query: 1067 PGGRXKXLGPP*PGVXXFLPXXXGXGEFXENXEKKKPXGPXXPLGGGHXXGVPXXGTGXP 1246
P G + L P PG P G E K P P G P T P
Sbjct: 233 PTGSSRPLPAPPPGENRPPPPMRGPTSGGEPPPPKN--APPPPKRGS--SNPPPPPTRGP 288
Query: 1247 XXXXXXXXXXPXPP----APGXXXRFXXXXPXXXPXPXXAXGGXXPXXPXTXGPPPLGXX 1414
P PP AP P P P PPP
Sbjct: 289 PSNSFTTQGPPLPPSRDQAPAPPPPLNATPPPPPPSRDQVPLPPPPLRGQIAPPPPPISK 348
Query: 1415 RPXXXGXXXPPPPGXAXXPPXXPXP 1489
P PPPPG A P P P
Sbjct: 349 PPTSTRSAPPPPPGRAPQPLGGPPP 373
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 34.7 bits (76), Expect = 0.19
Identities = 40/156 (25%), Positives = 46/156 (29%), Gaps = 4/156 (2%)
Frame = +2
Query: 1028 GWLXVGPXPGRXXPGGRXKXLGPP*PGVXXFLPXXXGXGEFXENXEKKKPXG-PXXPLGG 1204
G L G P + P G K G G P +N P G P P G
Sbjct: 7 GGLFAGGMP-KLRPAGERKAAGAGPRGPALKPPGFRTTAPPPKNSSPPPPFGAPPPPDRG 65
Query: 1205 GHXXGVPXXGTGXPXXXXXXXXXXPXPPAPGXXXRFXXXXPXXX---PXPXXAXGGXXPX 1375
G P G+ P P PP+ G F P P G P
Sbjct: 66 GQLAKKPSQGSFPPPPPMGK----PPPPS-GNKPTFGNSRTSTNGPPPPPHSRHGSAPPP 120
Query: 1376 XPXTXGPPPLGXXRPXXXGXXXPPPPGXAXXPPXXP 1483
+ GPPP R PPP G + P P
Sbjct: 121 PERSSGPPPPPPGRGPSQRSLAPPPTGSSRPLPAPP 156
Score = 29.5 bits (63), Expect = 7.2
Identities = 37/145 (25%), Positives = 38/145 (26%), Gaps = 4/145 (2%)
Frame = +2
Query: 1067 PGGRXKXLGPP*PGVXXFLPXXXGXGEFXENXEKKKPXGPXXPLGGGHXXGVPXXGTGXP 1246
P G + L P PG P G E K P P G P T P
Sbjct: 145 PTGSSRPLPAPPPGENRPPPPMRGPTSGGEPPPPKN--APPPPKRGS--SNPPPPPTRGP 200
Query: 1247 XXXXXXXXXXPXPP----APGXXXRFXXXXPXXXPXPXXAXGGXXPXXPXTXGPPPLGXX 1414
P PP AP P P P PPP
Sbjct: 201 PSNSFTTQGPPLPPSRDQAPAPPPPLNATPPPPPPSRDQVPLPPPPLRGQIAPPPPPISK 260
Query: 1415 RPXXXGXXXPPPPGXAXXPPXXPXP 1489
P PPPPG A P P P
Sbjct: 261 PPTSTRSAPPPPPGRAPQPLGGPPP 285
>SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056)
Length = 245
Score = 34.3 bits (75), Expect = 0.25
Identities = 18/53 (33%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Frame = +2
Query: 1337 PXPXXAXGGXXPXXPXTXGPPPLGXXRPXXX--GXXXPPPPGXAXXPPXXPXP 1489
P G P P GPPP+G P G PPPP P P P
Sbjct: 190 PAGVGQHSGPYPGQPGMWGPPPMGGPPPMGGPPGGYPPPPPPPGAGDPAYPPP 242
>SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37)
Length = 1063
Score = 31.9 bits (69), Expect = 1.4
Identities = 21/71 (29%), Positives = 21/71 (29%)
Frame = -3
Query: 1488 GXGXXGGXXAXPGGGGXXXPXXXGRXXPXGGGPXVXGXXGXXPPXAXXGXGXXXGXXXXN 1309
G G GG GGGG G GGG G G G G G
Sbjct: 783 GDGGGGGGGGGGGGGGGGGGDGGGYGDGDGGGGGGGGGGGGGGDGGGYGDGGGFGDGGGY 842
Query: 1308 RXXXPGAGGXG 1276
G GG G
Sbjct: 843 ADGDGGGGGGG 853
Score = 31.9 bits (69), Expect = 1.4
Identities = 21/71 (29%), Positives = 22/71 (30%)
Frame = -3
Query: 1488 GXGXXGGXXAXPGGGGXXXPXXXGRXXPXGGGPXVXGXXGXXPPXAXXGXGXXXGXXXXN 1309
G G GG GGGG G GGG G G G G G +
Sbjct: 785 GGGGGGGGGGGGGGGGGGDGGGYGDGDGGGGGGGGGGGGGGDGGGYGDGGGFGDGGGYAD 844
Query: 1308 RXXXPGAGGXG 1276
G GG G
Sbjct: 845 GDGGGGGGGGG 855
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 31.5 bits (68), Expect = 1.8
Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Frame = +2
Query: 1337 PXPXXAXGGXXPXXPXTXGPPP--LGXXRPXXXGXXXPPPPGXAXXPPXXPXP 1489
P P + P P PPP +G P G PPPP P P P
Sbjct: 327 PPPPPSRSSQRPPPPSRGAPPPPSMGMAPPPVGGAAPPPPPPPPVGGPPPPPP 379
Score = 31.1 bits (67), Expect = 2.4
Identities = 24/88 (27%), Positives = 26/88 (29%), Gaps = 4/88 (4%)
Frame = +2
Query: 1232 GTGXPXXXXXXXXXXPXPPAPGXXXRFXXXXPXXXPXPXXAXGGXXPXXPXTXGPPP--- 1402
GT P P PP+ G P P P P GPPP
Sbjct: 323 GTAPPPPPPSRSSQRPPPPSRGAPPP---PSMGMAPPPVGGAAPPPPPPPPVGGPPPPPP 379
Query: 1403 -LGXXRPXXXGXXXPPPPGXAXXPPXXP 1483
+ P G PPPP PP P
Sbjct: 380 PIEGRPPSSLGNPPPPPPPGRGAPPPGP 407
Score = 29.9 bits (64), Expect = 5.5
Identities = 18/51 (35%), Positives = 18/51 (35%)
Frame = +2
Query: 1337 PXPXXAXGGXXPXXPXTXGPPPLGXXRPXXXGXXXPPPPGXAXXPPXXPXP 1489
P P GG P P G PP P PPPPG PP P
Sbjct: 365 PPPPPPVGGPPPPPPPIEGRPPSSLGNPPP-----PPPPGRGAPPPGPMIP 410
Score = 29.5 bits (63), Expect = 7.2
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +2
Query: 1361 GXXPXXPXTXGPPPLGXXRPXXXGXXXPPPPGXAXXPPXXPXP 1489
G P P PPP P G PPPP P P P
Sbjct: 294 GAAPPPPSRGAPPP-----PPSRGSAPPPPPARMGTAPPPPPP 331
>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1063
Score = 31.1 bits (67), Expect = 2.4
Identities = 25/74 (33%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
Frame = +2
Query: 1277 PXPPAPGXXXRFXXXXPXXXPXPXXAXGGXXPXXPXTXGPPPLGXXRPXXXGXXXPPP-- 1450
P PP P P P P G P P PPP P G PPP
Sbjct: 679 PPPPLPVIEGSSLSVPPPPPPPPPPLLSGTLPMPPPP--PPP----PPGCAGLPPPPPSP 732
Query: 1451 -PGXAXXPPXXPXP 1489
PG A PP P P
Sbjct: 733 QPGCAGLPPPPPPP 746
Score = 29.9 bits (64), Expect = 5.5
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = +2
Query: 1325 PXXXPXPXXAXGGXXPXXPXTXGPPPLGXXRPXXXGXXXPPPPGXAXXPPXXPXP 1489
P P P P PPPL PPPPG A PP P P
Sbjct: 678 PPPPPLPVIEGSSLSVPPPPPPPPPPLLSGTLPMPPPPPPPPPGCAGLPPPPPSP 732
>SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 31.1 bits (67), Expect = 2.4
Identities = 20/71 (28%), Positives = 20/71 (28%)
Frame = -3
Query: 1488 GXGXXGGXXAXPGGGGXXXPXXXGRXXPXGGGPXVXGXXGXXPPXAXXGXGXXXGXXXXN 1309
G G GG GGGG G GG G A G G G
Sbjct: 243 GGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGA 302
Query: 1308 RXXXPGAGGXG 1276
GA G G
Sbjct: 303 TGGGGGATGVG 313
Score = 31.1 bits (67), Expect = 2.4
Identities = 20/71 (28%), Positives = 20/71 (28%)
Frame = -3
Query: 1488 GXGXXGGXXAXPGGGGXXXPXXXGRXXPXGGGPXVXGXXGXXPPXAXXGXGXXXGXXXXN 1309
G G GG GGGG G GG G A G G G
Sbjct: 250 GGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGA 309
Query: 1308 RXXXPGAGGXG 1276
GA G G
Sbjct: 310 TGVGGGATGGG 320
Score = 31.1 bits (67), Expect = 2.4
Identities = 20/71 (28%), Positives = 20/71 (28%)
Frame = -3
Query: 1488 GXGXXGGXXAXPGGGGXXXPXXXGRXXPXGGGPXVXGXXGXXPPXAXXGXGXXXGXXXXN 1309
G G GG GGGG G GG G A G G G
Sbjct: 257 GGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGVGGGA 316
Query: 1308 RXXXPGAGGXG 1276
GA G G
Sbjct: 317 TGGGGGATGGG 327
Score = 31.1 bits (67), Expect = 2.4
Identities = 20/71 (28%), Positives = 20/71 (28%)
Frame = -3
Query: 1488 GXGXXGGXXAXPGGGGXXXPXXXGRXXPXGGGPXVXGXXGXXPPXAXXGXGXXXGXXXXN 1309
G G GG GGGG G GG G A G G G
Sbjct: 271 GGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGVGGGATGGGGGATGGGVGA 330
Query: 1308 RXXXPGAGGXG 1276
GA G G
Sbjct: 331 TGGGGGATGGG 341
Score = 31.1 bits (67), Expect = 2.4
Identities = 21/84 (25%), Positives = 21/84 (25%)
Frame = -3
Query: 1488 GXGXXGGXXAXPGGGGXXXPXXXGRXXPXGGGPXVXGXXGXXPPXAXXGXGXXXGXXXXN 1309
G G GG GGGG G GGG G G G G
Sbjct: 278 GGGATGGGGGATGGGGG---ATGGGGGATGGGGGATGVGGGATGGGGGATGGGVGATGGG 334
Query: 1308 RXXXPGAGGXGXXXXXXXXXXGXP 1237
G GG G P
Sbjct: 335 GGATGGGGGVTGGGGGATGGGGGP 358
Score = 29.5 bits (63), Expect = 7.2
Identities = 21/74 (28%), Positives = 22/74 (29%), Gaps = 3/74 (4%)
Frame = -3
Query: 1488 GXGXXGGXXAXPGGGGXXXPXXXGRXXPXGGGPXVXGXXGXXPPXAXXGXG---XXXGXX 1318
G G GG GGGG G GGG G G G G
Sbjct: 292 GGGATGGGGGATGGGGGA-TGVGGGATGGGGGATGGGVGATGGGGGATGGGGGVTGGGGG 350
Query: 1317 XXNRXXXPGAGGXG 1276
PG+GG G
Sbjct: 351 ATGGGGGPGSGGCG 364
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 31.1 bits (67), Expect = 2.4
Identities = 31/108 (28%), Positives = 33/108 (30%), Gaps = 13/108 (12%)
Frame = +2
Query: 1199 GGGHXXGVPXXGTGXPXXXXX-XXXXXPXPPAPGXXXRFXXXXPXXX----PXPXXAXGG 1363
GGG G P G G PP PG + P P P A G
Sbjct: 485 GGGQGWGQPPPGAGQGGGPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQG 544
Query: 1364 XXPXXPXTX---GPPPLGXXR-----PXXXGXXXPPPPGXAXXPPXXP 1483
P P G PP G + P G PPPPG P P
Sbjct: 545 GGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGPPPPGAGQEGPPPP 592
Score = 31.1 bits (67), Expect = 2.4
Identities = 29/98 (29%), Positives = 30/98 (30%), Gaps = 6/98 (6%)
Frame = +2
Query: 1181 GPXXPLGGGHXXGVPXXGTGXPXXXXX-XXXXXPXPPAPGXXXRFXXXXPXXX-----PX 1342
GP P G G G P G G PP PG + P P
Sbjct: 513 GPPPP-GAGQGWGQPPPGAGQGGGPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPP 571
Query: 1343 PXXAXGGXXPXXPXTXGPPPLGXXRPXXXGXXXPPPPG 1456
P GG P GPPP P PPPPG
Sbjct: 572 PGAGQGGPPPPGAGQEGPPP-----PGAGQGGGPPPPG 604
>SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4)
Length = 186
Score = 30.7 bits (66), Expect = 3.1
Identities = 19/69 (27%), Positives = 19/69 (27%)
Frame = -3
Query: 1488 GXGXXGGXXAXPGGGGXXXPXXXGRXXPXGGGPXVXGXXGXXPPXAXXGXGXXXGXXXXN 1309
G G GG GGGG G GGG G G G G
Sbjct: 93 GGGATGGGGGATGGGGG---ATGGHGGATGGGVGATGGHGGATGGHGGATGGHGGATGGG 149
Query: 1308 RXXXPGAGG 1282
G GG
Sbjct: 150 GGATGGGGG 158
Score = 29.9 bits (64), Expect = 5.5
Identities = 21/72 (29%), Positives = 21/72 (29%), Gaps = 1/72 (1%)
Frame = -3
Query: 1488 GXGXXGGXXAXPGGGGXXXPXXXGRXXPXGGGPXVXGXXGXXPPXAXXGXGXXXGXXXXN 1309
G G GG GGGG G GG G A G G G
Sbjct: 58 GGGATGGGGGATGGGGGATGGHGGATGGGGGATGDGGGATGGGGGATGGGGGATGGHGGA 117
Query: 1308 RXXXPGA-GGXG 1276
GA GG G
Sbjct: 118 TGGGVGATGGHG 129
Score = 29.5 bits (63), Expect = 7.2
Identities = 19/69 (27%), Positives = 20/69 (28%)
Frame = -3
Query: 1488 GXGXXGGXXAXPGGGGXXXPXXXGRXXPXGGGPXVXGXXGXXPPXAXXGXGXXXGXXXXN 1309
G G GG GGGG G GGG G G G G +
Sbjct: 72 GGGATGGHGGATGGGGGATGDGGG---ATGGGGGATGGGGGATGGHGGATGGGVGATGGH 128
Query: 1308 RXXXPGAGG 1282
G GG
Sbjct: 129 GGATGGHGG 137
>SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2988
Score = 30.3 bits (65), Expect = 4.1
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 638 TFFSFANAPSFYNNEFMGKIKTYGHGGGEYIICYKHIYHNTI 513
T +SF +A + G+I TY GG YI+ + IY+ +
Sbjct: 2482 TIWSFNSASKLNGYPYFGEISTYSGGG--YIVPFSSIYYKAV 2521
>SB_34887| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.95)
Length = 439
Score = 30.3 bits (65), Expect = 4.1
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 1473 GGXXAXPGGGGXXXPXXXGRXXPXGGG 1393
GG + PGGG P + P GGG
Sbjct: 49 GGSQSSPGGGSQSSPGGGSQSSPGGGG 75
>SB_23149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 29.9 bits (64), Expect = 5.5
Identities = 18/67 (26%), Positives = 18/67 (26%)
Frame = -3
Query: 1482 GXXGGXXAXPGGGGXXXPXXXGRXXPXGGGPXVXGXXGXXPPXAXXGXGXXXGXXXXNRX 1303
G GG A GGG G GGG G G G G
Sbjct: 282 GGPGGINAGGGGGDSTTDSDDGAGGGGGGGHFSGGAGGAAATGCTNQYGGSGGIASSTIG 341
Query: 1302 XXPGAGG 1282
G GG
Sbjct: 342 ACAGGGG 348
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 29.9 bits (64), Expect = 5.5
Identities = 21/66 (31%), Positives = 21/66 (31%)
Frame = +2
Query: 1277 PXPPAPGXXXRFXXXXPXXXPXPXXAXGGXXPXXPXTXGPPPLGXXRPXXXGXXXPPPPG 1456
P PP P P P G P P T GPPP P PPPP
Sbjct: 355 PSPPPPTNNTPPPPPPTNKPPPPPPPTNGPPPPPPPTNGPPP-----PPPPTNGPPPPPP 409
Query: 1457 XAXXPP 1474
PP
Sbjct: 410 PTNGPP 415
>SB_10571| Best HMM Match : Cas1p (HMM E-Value=1.8e-26)
Length = 765
Score = 29.9 bits (64), Expect = 5.5
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = -3
Query: 1488 GXGXXGGXXAXPGGGGXXXPXXXGRXXPXGGGPXVXGXXGXXPPXAXXGXGXXXG 1324
G G GG GGGG G GGG G G A G G G
Sbjct: 660 GDGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGAGAGAGDDDG 714
>SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)
Length = 135
Score = 29.5 bits (63), Expect = 7.2
Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Frame = +2
Query: 1325 PXXXPXPXXAXGGXXPXX----PXTXGPPPLGXXRPXXXGXXXPPPPGXAXXPP 1474
P P A GG P P G PP G G PP PG A PP
Sbjct: 17 PYMGGYPPAAPGGYPPAPGGYPPAPGGYPPSGGYGYPPAGGYPPPQPGYAGGPP 70
>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 29.5 bits (63), Expect = 7.2
Identities = 23/76 (30%), Positives = 23/76 (30%), Gaps = 5/76 (6%)
Frame = +2
Query: 1277 PXPPAPGXXXRFXXXXPXXXPXPXXAXGGXXPXXPXTXGPPPLGXXRP-----XXXGXXX 1441
P PG P P P GG P P GPP L G
Sbjct: 367 PVQRPPGMRPPGAGNGPGGPPPPWSKPGGILPGPPPP-GPPMLNMAPSIPPWQTTPGYIP 425
Query: 1442 PPPPGXAXXPPXXPXP 1489
PPPPG P P P
Sbjct: 426 PPPPGFPQFQPPPPPP 441
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 29.5 bits (63), Expect = 7.2
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +2
Query: 1370 PXXPXTXGPPPLGXXRPXXXGXXXPPPPGXAXXPPXXPXP 1489
P P PPP P PPPP PP P P
Sbjct: 125 PPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPP 164
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 29.1 bits (62), Expect = 9.6
Identities = 17/49 (34%), Positives = 17/49 (34%)
Frame = +2
Query: 1343 PXXAXGGXXPXXPXTXGPPPLGXXRPXXXGXXXPPPPGXAXXPPXXPXP 1489
P G P P PPP P PPPPG PP P P
Sbjct: 293 PPPPADGSAPAPP----PPPPPGGAPPPPPPPPPPPPGDGGAPPPPPPP 337
>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
Length = 772
Score = 29.1 bits (62), Expect = 9.6
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = +2
Query: 1358 GGXXPXXPXTXGPP-PLGXXRPXXXGXXXPP 1447
GG P P T PP P G RP G PP
Sbjct: 221 GGTVPPTPATAPPPNPDGTPRPEINGKKIPP 251
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,342,322
Number of Sequences: 59808
Number of extensions: 624440
Number of successful extensions: 1576
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4824226347
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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