Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D07_e340_07.seq
         (1512 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7R2A0 Cluster: GLP_422_41284_40838; n=1; Giardia lambl...    35   6.4  

>UniRef50_Q7R2A0 Cluster: GLP_422_41284_40838; n=1; Giardia lamblia
           ATCC 50803|Rep: GLP_422_41284_40838 - Giardia lamblia
           ATCC 50803
          Length = 148

 Score = 34.7 bits (76), Expect = 6.4
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = -3

Query: 823 AHKSRRSERCVSGSQVEEGWSLCIPLYERGLMYVRSMYFLIYSRVVFTKISSNLINYN 650
           A + +RS+      ++++ WS C  L  R   ++R +YF I   + +T  +S +I YN
Sbjct: 2   AKRIQRSQTTTLRKRIDKAWSFCDNLVARVYRHIRPLYFYILLCIAYTFSTSGVI-YN 58


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 987,456,911
Number of Sequences: 1657284
Number of extensions: 16002099
Number of successful extensions: 31366
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 29449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31335
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 160908510525
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)