Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D07_e340_07.seq
         (1512 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.4  
SB_16070| Best HMM Match : IncA (HMM E-Value=0.43)                     29   7.4  
SB_8666| Best HMM Match : Flagellar_rod (HMM E-Value=2.5)              29   9.7  

>SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 620

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -3

Query: 832 YECAHKSRRSERCVSGSQVEEGWSLCIPLYERGLMYVRSMYFLIYSRVVFTK 677
           ++C H   R+E  +  +Q +EGW  CIP   +G  + R+M+   +    F K
Sbjct: 79  HQCRHCRVRTED-LHPAQTQEGWRDCIPFNLQGRRWERAMFLHSFCSTGFGK 129


>SB_16070| Best HMM Match : IncA (HMM E-Value=0.43)
          Length = 895

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 970 IDPXRLXNXIYRANPPXANPGGRXLRQIKDGLKKGPG 860
           I   RL + I R  PP   PG   L + +DG +  PG
Sbjct: 605 ISRVRLADQIVRVIPPDDTPGAEALLRRRDGTRSIPG 641


>SB_8666| Best HMM Match : Flagellar_rod (HMM E-Value=2.5)
          Length = 895

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = +1

Query: 289 IINRYSLSFTKRILGGISVYRT*SQYLAVIFNSIT-CAIGLYIV*FFCFVLFY 444
           +++ YS+ FT+R+LGG +V+   ++ L V+++++T C + +Y     C +  Y
Sbjct: 624 LLDGYSV-FTRRLLGGYTVF---TRRLLVVYSTVTRCLLDVYSAFTRCLLGVY 672


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,318,966
Number of Sequences: 59808
Number of extensions: 493220
Number of successful extensions: 921
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4906390786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)