Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D07_e340_07.seq
         (1512 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006720-1|AAF60446.1|  350|Caenorhabditis elegans Hypothetical ...    29   8.6  

>AC006720-1|AAF60446.1|  350|Caenorhabditis elegans Hypothetical
           protein Y17G9B.5 protein.
          Length = 350

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 678 FVNTTLLYIKKYILRTYISPLSYKGMQRLHPSSTCDPDT 794
           F+NT L Y+K+Y +   I   +YKG+  + P     P T
Sbjct: 65  FINTALKYVKEYGVHKDID--TYKGLLEVFPKGKMIPQT 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,947,993
Number of Sequences: 27780
Number of extensions: 416769
Number of successful extensions: 915
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4360398082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)