Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D07_e340_07.seq
         (1512 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62800.2 68414.m07090 aspartate aminotransferase, cytoplasmic...    29   6.1  
At1g62800.1 68414.m07089 aspartate aminotransferase, cytoplasmic...    29   6.1  

>At1g62800.2 68414.m07090 aspartate aminotransferase, cytoplasmic
           isozyme 2 / transaminase A (ASP4) identical to aspartate
           aminotransferase, cytoplasmic isozyme 2 SP:P46646
           [Arabidopsis thaliana]
          Length = 405

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -2

Query: 572 TSKKMAGHPARTLHRIFVTLHNKRSVIFFPIQFAWTQ*PKYFT*NKTKQKNYTIYSP 402
           T++ ++G  +  +   F+  HNK SVIF P    W   P+ FT      + +  Y P
Sbjct: 101 TTQCLSGTGSLRVGAEFLATHNKESVIFVP-NPTWGNHPRIFTLAGLSVQYFRYYDP 156


>At1g62800.1 68414.m07089 aspartate aminotransferase, cytoplasmic
           isozyme 2 / transaminase A (ASP4) identical to aspartate
           aminotransferase, cytoplasmic isozyme 2 SP:P46646
           [Arabidopsis thaliana]
          Length = 403

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -2

Query: 572 TSKKMAGHPARTLHRIFVTLHNKRSVIFFPIQFAWTQ*PKYFT*NKTKQKNYTIYSP 402
           T++ ++G  +  +   F+  HNK SVIF P    W   P+ FT      + +  Y P
Sbjct: 99  TTQCLSGTGSLRVGAEFLATHNKESVIFVP-NPTWGNHPRIFTLAGLSVQYFRYYDP 154


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,216,706
Number of Sequences: 28952
Number of extensions: 353639
Number of successful extensions: 595
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4038570048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)