Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D06_e332_08.seq
         (1553 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    28   0.16 
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    26   0.86 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    25   1.5  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    25   1.5  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    25   1.5  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    25   1.5  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    25   1.5  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 28.3 bits (60), Expect = 0.16
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = -1

Query: 458 LAMHVLLVQSTVEYLQVTASAVDVLFVLHTELYHQRFALIAEWLEFPR*GVEPRVF 291
           L  H   +++  E+L      VD +   H ++Y      + +W++ PR   E + F
Sbjct: 422 LYFHAAWLKNNPEFLDAFLYWVDEILANHNDVYFVTMTQVIQWIQNPRTITESKNF 477


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 25.8 bits (54), Expect = 0.86
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -1

Query: 425 VEYLQVTASAVDVLFVLHTELYHQRFALI 339
           V+Y ++  S  +++F ++T +  +RF LI
Sbjct: 36  VQYPRIVVSTFNIVFYMYTLILEERFKLI 64


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 327 KPFSNEGKPLVVQFSVKHEQDID 395
           +P +NE +PL V+F +  +Q ID
Sbjct: 20  RPVANESEPLEVKFGLTLQQIID 42


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 327 KPFSNEGKPLVVQFSVKHEQDID 395
           +P +NE +PL V+F +  +Q ID
Sbjct: 20  RPVANESEPLEVKFGLTLQQIID 42


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 327 KPFSNEGKPLVVQFSVKHEQDID 395
           +P +NE +PL V+F +  +Q ID
Sbjct: 20  RPVANESEPLEVKFGLTLQQIID 42


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 327 KPFSNEGKPLVVQFSVKHEQDID 395
           +P +NE +PL V+F +  +Q ID
Sbjct: 20  RPVANESEPLEVKFGLTLQQIID 42


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 327 KPFSNEGKPLVVQFSVKHEQDID 395
           +P +NE +PL V+F +  +Q ID
Sbjct: 20  RPVANESEPLEVKFGLTLQQIID 42


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,240
Number of Sequences: 336
Number of extensions: 4623
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 46808225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)