Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D06_e332_08.seq
         (1553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    86   1e-17
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    39   0.002

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 51/139 (36%), Positives = 74/139 (53%), Gaps = 8/139 (5%)
 Frame = +3

Query: 264 EADKGLQTSEDARFYALSRKF-KPFSNEGKPLVVQFSVKHEQDIDCGGGYLKVFDCRLDQ 440
           + + GL   ++A  +A+S +F +P +   K LVVQ+ V  E+ ++CGG YLK+       
Sbjct: 87  KGEAGLVMKDEAAHHAISYEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKLL-AEPTH 145

Query: 441 KDMHGETPYEIMFGPDICGPGTKKVHVIFSYK-------GKNHLIKKDIRCKDDVYTHLY 599
            +M     Y IMFGPD CG    +VH IF +K        + HL  +         T+LY
Sbjct: 146 GEMSNSIDYRIMFGPDKCGV-NDRVHFIFKHKNPLTGEYSEKHLDSRPASLLKPGITNLY 204

Query: 600 TLIVKPDNTYEVLSDNEKV 656
           TLIVKPD T+EV  + + V
Sbjct: 205 TLIVKPDQTFEVRINGDVV 223



 Score = 29.9 bits (64), Expect = 0.99
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
 Frame = +2

Query: 731 PED-LGPQTHXSPDPEDNETRXLGQTLEXHFGPLMXVSPEXLDDEXXXXXEPPYDXXPXL 907
           PED L  +    PDPE  +        +  + P   ++P+ ++       +PP    P  
Sbjct: 286 PEDWLEDEPLYIPDPEAQKPEDWDDEEDGDWIPSEIINPKCIEGAGCGEWKPPMIRNPNY 345

Query: 908 XGRLGPXQIXTPAXKGPWXHPXXXP 982
            G   P  I  P   G W +P   P
Sbjct: 346 RGPWSPPMIPNPEFIGEW-YPRKIP 369


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 7/178 (3%)
 Frame = +3

Query: 144 VFFEEKFSDD--SWESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEDARFYAL- 314
           VF E+  S+D  +W S W       K+ G + L      +    + GL T +  + + L 
Sbjct: 32  VFSEQFTSEDITTWRSRW--RAPVNKDLGVWDLVEAPG-SHLRDEYGLITLKSNKPHILI 88

Query: 315 SRKFKPFSNEGK--PLVVQFSVKHEQDIDCGGGYLKVFDCRLDQKDMHGETPYEIMFGPD 488
           S    P + +    P+V+ F VK  +   CG  Y+ +   + + K++  E P  I FG  
Sbjct: 89  SNLENPTTRQSSSVPIVLSFQVKPTKPWTCGHAYVSLVH-QSNPKNVSKEPPSVIRFGVK 147

Query: 489 ICGPGTKKVHVIFSYKGK--NHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLSDNEKV 656
            CG        I SY GK   HL         +  T +YTL+++  NT  V+  ++ V
Sbjct: 148 KCGMFDYISLSIISYDGKVSCHLYDAPPSGLVEGRTSMYTLLLQ--NTTVVIRRDQSV 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,187,431
Number of Sequences: 5004
Number of extensions: 75086
Number of successful extensions: 206
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 874138734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)