Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D06_e332_08.seq
         (1553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...   246   2e-65
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...   246   2e-65
Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical pr...    90   4e-18
U53147-4|AAA96115.1|  668|Caenorhabditis elegans Temporarily ass...    29   8.9  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score =  246 bits (603), Expect = 2e-65
 Identities = 128/287 (44%), Positives = 167/287 (58%), Gaps = 1/287 (0%)
 Frame = +3

Query: 135 NCEVFFEEKFSDDSWESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEDARFYAL 314
           + EV+F+E+F+D SWE  WV S+H   +FG FKL+AGKF++    D+G+QTS+DA+FY+ 
Sbjct: 14  SAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYSR 72

Query: 315 SRKF-KPFSNEGKPLVVQFSVKHEQDIDCGGGYLKVFDCRLDQKDMHGETPYEIMFGPDI 491
           + KF K FSN+GK LV+Q++VKHEQ IDCGGGY+KV     D  D HGETPY +MFGPDI
Sbjct: 73  AAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPDI 132

Query: 492 CGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLSDNEKV*IW*I 671
           CGP T++VHVI +YKG+N LIKK+I CK D  THLYTLI+  DNTYEV  D E      +
Sbjct: 133 CGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSL 191

Query: 672 RSRLGLPTXEEDQGSXSKXNLKIWDHXXXXXXXXXXXXXXDWDKPLSXISDP*XP*ALXI 851
                L   ++ +   +K   + WD               DW+KP   I DP        
Sbjct: 192 EEDWDLLPAKKIKDPDAK-KPEDWDE-REYIDDAEDAKPEDWEKP-EHIPDPDAK-KPED 247

Query: 852 WMMRXXXXWNHPMXXTPDYXGXWAXXKLXPLLXRXXGXTPXXXXPEY 992
           W       W  PM   P+Y G W   ++     +     P    PEY
Sbjct: 248 WDDEMDGEWEPPMIDNPEYKGEWKPKQIKNPAYKGKWIHPEIENPEY 294


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score =  246 bits (603), Expect = 2e-65
 Identities = 128/287 (44%), Positives = 167/287 (58%), Gaps = 1/287 (0%)
 Frame = +3

Query: 135 NCEVFFEEKFSDDSWESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEDARFYAL 314
           + EV+F+E+F+D SWE  WV S+H   +FG FKL+AGKF++    D+G+QTS+DA+FY+ 
Sbjct: 14  SAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYSR 72

Query: 315 SRKF-KPFSNEGKPLVVQFSVKHEQDIDCGGGYLKVFDCRLDQKDMHGETPYEIMFGPDI 491
           + KF K FSN+GK LV+Q++VKHEQ IDCGGGY+KV     D  D HGETPY +MFGPDI
Sbjct: 73  AAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPDI 132

Query: 492 CGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLSDNEKV*IW*I 671
           CGP T++VHVI +YKG+N LIKK+I CK D  THLYTLI+  DNTYEV  D E      +
Sbjct: 133 CGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSL 191

Query: 672 RSRLGLPTXEEDQGSXSKXNLKIWDHXXXXXXXXXXXXXXDWDKPLSXISDP*XP*ALXI 851
                L   ++ +   +K   + WD               DW+KP   I DP        
Sbjct: 192 EEDWDLLPAKKIKDPDAK-KPEDWDE-REYIDDAEDAKPEDWEKP-EHIPDPDAK-KPED 247

Query: 852 WMMRXXXXWNHPMXXTPDYXGXWAXXKLXPLLXRXXGXTPXXXXPEY 992
           W       W  PM   P+Y G W   ++     +     P    PEY
Sbjct: 248 WDDEMDGEWEPPMIDNPEYKGEWKPKQIKNPAYKGKWIHPEIENPEY 294


>Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK632.6 protein.
          Length = 619

 Score = 89.8 bits (213), Expect = 4e-18
 Identities = 54/144 (37%), Positives = 73/144 (50%), Gaps = 13/144 (9%)
 Frame = +3

Query: 264 EADKGLQTSEDARFYALSRKFK-PFSNEGKPLVVQFSVKHEQDIDCGGGYLKVFD--CRL 434
           E D GL     AR +A++ K   PF+ +    VVQ+ +K E+  +CGGGYLK+       
Sbjct: 107 EGDLGLIVKTKARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEK 166

Query: 435 DQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCK----------DDV 584
           D  +   +T Y IMFGPD CG  T KVH+IF YK   +    +              DD 
Sbjct: 167 DLANFQDKTAYTIMFGPDKCG-ATGKVHLIFRYKNPINGTISEYHANQPTTIGSTYWDDH 225

Query: 585 YTHLYTLIVKPDNTYEVLSDNEKV 656
            THL+TL+VKP   Y V  D + +
Sbjct: 226 NTHLFTLVVKPTGEYSVSVDGKSL 249


>U53147-4|AAA96115.1|  668|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 117 protein.
          Length = 668

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 450 ACPSGPVYSRIPSGNRLRSRCPVRASH*TVPPKVCPH 340
           +C S P+   I +GN    RCP  +S  +V P+  P+
Sbjct: 196 SCTSSPIPPVIMNGNGKSERCPSTSSSSSVSPRNAPN 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,829,023
Number of Sequences: 27780
Number of extensions: 442530
Number of successful extensions: 1015
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4483683936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)