Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D05_e324_07.seq
         (1507 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1614 + 34786296-34786315,34787432-34788347,34788426-347889...    29   9.6  

>04_04_1614 +
           34786296-34786315,34787432-34788347,34788426-34788950,
           34789065-34789442,34790435-34790740
          Length = 714

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = -3

Query: 395 LDV*RDCQ*RCTITKHISYCPNYKRKIIKNNISKPLSRSRNSPDNSMKILYSDFQDRTKK 216
           LD+ +DC     + + I +C +Y   ++ +  S  L+  R     ++ +L S  +D + K
Sbjct: 12  LDIMQDCDFLTELVQRIEFCLDYTLSVVLDRASDKLATIRKERRKNIDMLESLLRDTSTK 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,540,672
Number of Sequences: 37544
Number of extensions: 466325
Number of successful extensions: 985
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4826476928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)