Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_D04_e316_08.seq
(1542 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0375 - 43152161-43152262,43152556-43152664,43153433-431535... 177 2e-44
04_04_0453 - 25346114-25346214,25346600-25346699,25346901-253469... 65 1e-10
12_02_1106 - 26134960-26135115,26135901-26136207,26136421-26137004 36 0.11
11_04_0086 + 13362788-13362937,13363887-13363970,13364233-133642... 33 0.80
06_03_0925 - 25992699-25992836,25992920-25993033,25993199-259933... 31 2.4
03_01_0254 + 1983806-1984882 31 2.4
02_01_0497 + 3607227-3607462,3607600-3607661,3608138-3608286,360... 31 2.4
09_02_0036 + 3217163-3217584,3217752-3218322 29 7.4
06_03_0066 - 16145398-16145475,16145638-16145700,16146432-161465... 29 7.4
>01_07_0375 -
43152161-43152262,43152556-43152664,43153433-43153504,
43153690-43153834,43153930-43154085,43154557-43154618,
43154695-43155020
Length = 323
Score = 177 bits (431), Expect = 2e-44
Identities = 85/133 (63%), Positives = 97/133 (72%)
Frame = +1
Query: 79 WVCADAENLPLPDESYSAYTIAFGIRNCTHIEKVLEEAYRVLVPGGRFMCLEFSHLPNNT 258
W+ DAE L D S YTIAFGIRN THIEK L EAYRVL GGRF+CLE SH+
Sbjct: 191 WIQGDAEALSFEDGSMDGYTIAFGIRNVTHIEKALSEAYRVLKRGGRFLCLELSHVDVPL 250
Query: 259 LQWMYDQYSFQVIPVMGQLVAGQWKPYQYLVESIRQFPNQEKFKGMIEEAGFRQVTYENL 438
+ +YD YSF VIP +G+LVAG + YQYLVESIR+FPNQEKF MI+EAGF +V YENL
Sbjct: 251 FKEIYDVYSFSVIPAVGELVAGDRQSYQYLVESIRRFPNQEKFAQMIQEAGFERVEYENL 310
Query: 439 TFGTVAIHSGFKI 477
G VAIHSG K+
Sbjct: 311 VGGVVAIHSGLKL 323
>04_04_0453 -
25346114-25346214,25346600-25346699,25346901-25346962,
25347053-25347186,25347320-25347408,25347667-25347696
Length = 171
Score = 65.3 bits (152), Expect = 1e-10
Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 4/127 (3%)
Frame = +1
Query: 79 WVCADAENLPLPDESYSAYTIAFGIRNCTHIEKVLEEAYRVLVPGGRFMCLEF---SHLP 249
W+ DA +LP D + A T+ +G+RN K + E +RVL PG R L+F S L
Sbjct: 41 WIEGDALDLPFTDCYFDAVTVGYGLRNVVDKPKAMREIFRVLKPGSRASILDFNKSSSLF 100
Query: 250 NNTLQ-WMYDQYSFQVIPVMGQLVAGQWKPYQYLVESIRQFPNQEKFKGMIEEAGFRQVT 426
+LQ WM D V+P+ G + Y+YL SI + +++ + + +EAGF
Sbjct: 101 TTSLQSWMIDNV---VVPLASGY--GLTEEYKYLKSSILHYLTEKELEELAKEAGFSAAK 155
Query: 427 YENLTFG 447
+ L G
Sbjct: 156 HYELGGG 162
>12_02_1106 - 26134960-26135115,26135901-26136207,26136421-26137004
Length = 348
Score = 35.5 bits (78), Expect = 0.11
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +1
Query: 91 DAENLPLPDESYSAYTIAFGIRNCTHIEKVLEEAYRVLVPGG 216
DAE+LP P +++ Y A I ++ ++EAYRVL GG
Sbjct: 176 DAEDLPFPTDTFDRYVSAGSIEYWPDPQRGIKEAYRVLRLGG 217
>11_04_0086 +
13362788-13362937,13363887-13363970,13364233-13364294,
13365146-13365507,13365928-13366142,13366236-13366292
Length = 309
Score = 32.7 bits (71), Expect = 0.80
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = +2
Query: 14 PAVAAALXTSGIPRAAGNSAEGGCALMLRTCLYQTNHTVLTR*HLG*G-IARILKRSLKR 190
P A A SG+ + A GG + ML TC+ Q V R LG G A + K+ L
Sbjct: 11 PQAATAAAASGVWKTVKPFANGGASGMLATCVIQPIDMVKVRIQLGEGSAASVTKKMLAN 70
Query: 191 R-IAC*FPAVASCVWSSVTSLTTR 259
I+ + +++ + T T R
Sbjct: 71 EGISAFYKGLSAGLLRQATYTTAR 94
>06_03_0925 -
25992699-25992836,25992920-25993033,25993199-25993310,
25993686-25993879,25994075-25994297,25994383-25994483,
25995108-25995137,25995182-25995337
Length = 355
Score = 31.1 bits (67), Expect = 2.4
Identities = 25/91 (27%), Positives = 33/91 (36%)
Frame = +1
Query: 82 VCADAENLPLPDESYSAYTIAFGIRNCTHIEKVLEEAYRVLVPGGRFMCLEFSHLPNNTL 261
V AD LP S A I + E RVL PGG F+ F P N
Sbjct: 240 VRADISRLPFASSSIDAIHAGAAIHCWPSPSNAVAEISRVLRPGGVFVATTFLSSPRN-- 297
Query: 262 QWMYDQYSFQVIPVMGQLVAGQWKPYQYLVE 354
+ +S + + + Q+V Y Y E
Sbjct: 298 ----NPFSVEALRPLRQIVGPVNTSYNYFTE 324
>03_01_0254 + 1983806-1984882
Length = 358
Score = 31.1 bits (67), Expect = 2.4
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 82 VCADAENLPLPDESYS-AYTIAFGIRNCTHIEKVLEEAYRVLVPGGRFMCLEF 237
VC + ++P D S+ AY+I + ++ V E +RVL PGG ++ E+
Sbjct: 178 VCGNFLSMPFSDASFDGAYSIE-ATCHAPRLQDVYGEVFRVLKPGGLYVSYEW 229
>02_01_0497 +
3607227-3607462,3607600-3607661,3608138-3608286,
3608418-3608538,3608638-3608793,3609041-3609086,
3609414-3609480,3609553-3609629,3610180-3610249,
3610956-3611014,3611105-3611213,3611552-3611611,
3611701-3611763,3612007-3612131,3612260-3612422,
3612506-3612565,3612802-3612860,3613057-3613138,
3613227-3613290,3613506-3613573,3613648-3613758
Length = 668
Score = 31.1 bits (67), Expect = 2.4
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 16 RGGGRSXN*W-XPPGCRXFGRGWVCADAENLPL 111
+G GRS N W PPGC F DA LPL
Sbjct: 97 KGRGRSKNVWESPPGCLMFSFTSQMEDARKLPL 129
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 29.5 bits (63), Expect = 7.4
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 757 ITIHWPSFYN-VXTGKTLALPNXIALQH 837
I+ W F N V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>06_03_0066 -
16145398-16145475,16145638-16145700,16146432-16146518,
16147168-16147246,16147359-16147478,16149289-16149440
Length = 192
Score = 29.5 bits (63), Expect = 7.4
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 139 IAFGIRNCT---HIEKVLEEAYRVLVPGGRFMCLEFSHLPNNTLQWMYDQYSF 288
+AF I+ CT H++KVLEEA P +F+ +E P L ++Y F
Sbjct: 86 VAFTIK-CTYTQHLDKVLEEAAATFHPHVKFVRVECPKYPGFCLTRQKNEYPF 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,059,074
Number of Sequences: 37544
Number of extensions: 499056
Number of successful extensions: 1043
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4965702224
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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