Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D04_e316_08.seq
         (1542 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-7|AAK93871.1|  285|Caenorhabditis elegans Coenzyme q (ubi...   166   3e-41
AF125448-8|AAD12813.2|  334|Caenorhabditis elegans Hypothetical ...    40   0.004
Z66567-4|CAA91493.2|  618|Caenorhabditis elegans Hypothetical pr...    29   8.8  

>L14429-7|AAK93871.1|  285|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 5 protein.
          Length = 285

 Score =  166 bits (404), Expect = 3e-41
 Identities = 75/132 (56%), Positives = 97/132 (73%)
 Frame = +1

Query: 79  WVCADAENLPLPDESYSAYTIAFGIRNCTHIEKVLEEAYRVLVPGGRFMCLEFSHLPNNT 258
           WVCA+AE +P    +Y  +T++FGIRNCTH EKV+ EA+RVL PGG+   LEFS + N+ 
Sbjct: 152 WVCANAEQMPFESNTYDLFTMSFGIRNCTHPEKVVREAFRVLKPGGQLAILEFSEV-NSA 210

Query: 259 LQWMYDQYSFQVIPVMGQLVAGQWKPYQYLVESIRQFPNQEKFKGMIEEAGFRQVTYENL 438
           L+ +YD YSF VIPV+G+++A     YQYLVESIR+FPNQ++F  +I E GF  V YENL
Sbjct: 211 LKPIYDAYSFNVIPVLGEILASDRASYQYLVESIRKFPNQDEFARIIREEGFSNVRYENL 270

Query: 439 TFGTVAIHSGFK 474
           TFG  +IH G K
Sbjct: 271 TFGVCSIHKGMK 282


>AF125448-8|AAD12813.2|  334|Caenorhabditis elegans Hypothetical
           protein H14E04.1 protein.
          Length = 334

 Score = 40.3 bits (90), Expect = 0.004
 Identities = 15/48 (31%), Positives = 29/48 (60%)
 Frame = +1

Query: 82  VCADAENLPLPDESYSAYTIAFGIRNCTHIEKVLEEAYRVLVPGGRFM 225
           V AD + +P  D ++      + ++   +++KV++E  RVL PGG+F+
Sbjct: 149 VAADCQKMPFEDSTFDVAYAIYSLKYIPNLDKVMKEIQRVLKPGGKFI 196


>Z66567-4|CAA91493.2|  618|Caenorhabditis elegans Hypothetical
           protein ZK455.4 protein.
          Length = 618

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 151 IRNCTHIEKVLEEAYRVLVPGGRFMCLEFSHLPNN 255
           I NC H +K L   + + +PGG+     +  +P+N
Sbjct: 144 IANCGHSDKPLTHMWNITIPGGKPPIKPWPKIPDN 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,637,907
Number of Sequences: 27780
Number of extensions: 401041
Number of successful extensions: 745
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4442168344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)