Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D04_e316_08.seq
         (1542 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    25   2.3  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    25   2.3  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    25   2.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   7.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   7.0  

>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 112 PDESYSAYTIAFGIRNCTHIEKVLEEAYRVLVPGGR 219
           PDESY++      +    H +++L   ++ L+  GR
Sbjct: 21  PDESYTSKFDNINVDEILHSDRLLNNYFKCLMDEGR 56


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 112 PDESYSAYTIAFGIRNCTHIEKVLEEAYRVLVPGGR 219
           PDESY++      +    H +++L   ++ L+  GR
Sbjct: 21  PDESYTSKFDNINVDEILHSDRLLNNYFKCLMDEGR 56


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 112 PDESYSAYTIAFGIRNCTHIEKVLEEAYRVLVPGGR 219
           PDESY++      +    H +++L   ++ L+  GR
Sbjct: 21  PDESYTSKFDNINVDEILHSDRLLNNYFKCLMDEGR 56


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 243 VTELQTHEATAGN*HAIRLFKDLFN 169
           ++ L  H A AGN  A RL+ DL +
Sbjct: 14  LSALVVHGAVAGNPDAKRLYDDLLS 38


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 243 VTELQTHEATAGN*HAIRLFKDLFN 169
           ++ L  H A AGN  A RL+ DL +
Sbjct: 14  LSALVVHGAVAGNPDAKRLYDDLLS 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 266,997
Number of Sequences: 438
Number of extensions: 5012
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 54070500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)