Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D03_e308_07.seq
         (1610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|...   100   5e-22
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    56   1e-08
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    33   0.15 
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    29   2.4  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    28   3.2  

>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score =  100 bits (240), Expect = 5e-22
 Identities = 58/155 (37%), Positives = 88/155 (56%), Gaps = 3/155 (1%)
 Frame = +3

Query: 159 IKVGDMLPSLDLFEDSPANKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKM 338
           + VG  LP + L+E+ P   V   E  +  K ++  VPGAFTP CS + +PGY+ N  + 
Sbjct: 2   VAVGSTLPKVTLWENKPEEVV---EFPSQGKFIIVGVPGAFTPPCS-SQVPGYIANEKQF 57

Query: 339 KSEGVSEIVCVSVNDPYVMAAWGAQHN--TKGKVRMLADPNGAFIKALDLGTNLPP-LGG 509
            ++G+S I  V+VND +V  AW    +   +  V  +AD NG F KA D G +    LG 
Sbjct: 58  AAKGISGIYVVAVNDVFVTKAWKKSFDGGEQSGVHFVADWNGEFTKAFDAGFDASGLLGP 117

Query: 510 FRSKRFSMVINDSKVEELNVEPDGTGLSCSLADKL 614
            RSKR++ V+ + KV ++ +E + T +  S ADK+
Sbjct: 118 LRSKRYAAVVENGKVVKVFIENEVTDVDISSADKV 152


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 2/141 (1%)
 Frame = +3

Query: 159 IKVGDMLPSLDLFEDSPANKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKM 338
           I+VGD++P + L  D     +   +ITA K +V+FA P A TPGC+K    G+  N  K+
Sbjct: 46  IQVGDVIPDITL-PDEDGTSIRLRDITANKGLVIFAYPKASTPGCTKQGC-GFRDNYPKI 103

Query: 339 KSEGVSEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPNGAFIKALDLGTNLPPLGG-FR 515
           ++    E++ +S +      A+  + N      +L+DP G  IK   LG   P  G  FR
Sbjct: 104 QASDY-EVLGLSFDTSKAQKAFKDKQNF--PYHLLSDPKGELIK--KLGAEKPGGGKLFR 158

Query: 516 SK-RFSMVINDSKVEELNVEP 575
           S   F        V+E+++ P
Sbjct: 159 SHWIFEKGTGKCIVKEIDISP 179


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +3

Query: 48  IPRAAGNSARGIVRGISTFNNGVYVRALHTSKIAMAPIKVGDMLPSLDL 194
           +PRA G+      R  STFN+G+ +RAL       AP+    +L   DL
Sbjct: 367 LPRAPGSKVHA-ERQNSTFNSGISLRALRKEMGNTAPVSSNQLLKDADL 414


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 33/150 (22%), Positives = 59/150 (39%), Gaps = 2/150 (1%)
 Frame = +3

Query: 24  RPLLXTSGIPRAAGNSARGIVRGISTFNNGVYVRALHTSKIAMAPIKVGDMLPSLDLFED 203
           RP L +     ++ N  R     + +F+N  YV++ +    +++   + +++P   +  D
Sbjct: 282 RPSLRSVPSYPSSNNQRRPSASRVRSFSN--YVKSSNVVNPSLSQASL-EIIPRKSMKRD 338

Query: 204 SPANKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADK--MKSEGVSEIVCVSV 377
           S A    T  +T+  K      P            PG ++ A+K     E    I     
Sbjct: 339 SNAQNDGTSTMTSKLK------PSVGLSNTRDAPKPGGLRRANKPCFNKETKGSIFSKEN 392

Query: 378 NDPYVMAAWGAQHNTKGKVRMLADPNGAFI 467
             P+    WGA+  +     +LAD N A I
Sbjct: 393 KGPFTCNPWGAKKVSPPPCEVLADLNTASI 422


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 637 NSNYFLTLSLSASEHDNPVPSGSTFNSSTLLSLITIEKRF 518
           N N F+ +  S  EHD  +P+G +     LL     EK F
Sbjct: 352 NQNKFIPIGGSWVEHDTNIPNGESLIRQFLLGQHFFEKEF 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,652,902
Number of Sequences: 5004
Number of extensions: 85213
Number of successful extensions: 180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 911800040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)