Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_D03_e308_07.seq
(1610 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0811 + 24830496-24831194 133 4e-31
01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048 131 1e-30
02_01_0691 - 5167260-5167937 125 9e-29
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911... 111 1e-24
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 46 8e-05
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 31 2.6
02_01_0390 - 2824585-2825307,2828206-2828460,2829006-2829107,282... 31 2.6
06_01_0861 + 6527279-6527582,6527619-6527719,6527817-6528042,652... 31 3.4
02_02_0025 + 6183328-6186127,6186265-6186623 30 5.9
11_06_0690 + 26303733-26306540 29 7.8
10_08_0906 - 21472490-21472732,21472947-21473271,21473351-214735... 29 7.8
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885... 29 7.8
>06_03_0811 + 24830496-24831194
Length = 232
Score = 133 bits (321), Expect = 4e-31
Identities = 73/172 (42%), Positives = 106/172 (61%), Gaps = 7/172 (4%)
Frame = +3
Query: 123 RALHTSKIAMAPIKVGDMLPSLDL-FEDSPANKVNTC---EITAGKKVVLFAVPGAFTPG 290
RA+ S A A I VGD LP L + DSP ++ T ++TAGKKVVLFAVPGAFTP
Sbjct: 59 RAVSASAPAAATIAVGDKLPDATLSYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAFTPT 118
Query: 291 CSKTHLPGYVQNADKMKSEGVSEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPNGAFIK 470
C++ H+PG+V A +++++GV + CVSVND +VM AW +V +L+D NG +
Sbjct: 119 CTQKHVPGFVAKAGELRAKGVDAVACVSVNDAFVMRAWKESLGVGDEVLLLSDGNGELAR 178
Query: 471 ALDLGTNL--PPLG-GFRSKRFSMVINDSKVEELNVEPDGTGLSCSLADKLK 617
A+ + +L P G G RS+R++++ D V+ LN+E G + S + LK
Sbjct: 179 AMGVELDLSDKPAGLGVRSRRYALLAEDGVVKVLNLEEGGAFTTSSAEEMLK 230
>01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048
Length = 162
Score = 131 bits (317), Expect = 1e-30
Identities = 67/148 (45%), Positives = 95/148 (64%), Gaps = 4/148 (2%)
Frame = +3
Query: 150 MAPIKVGDMLPS--LDLFE-DSPANKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGYV 320
MAP+ VGD LP L F+ + +V+ + AGKKVVLF VPGAFTP CS H+PG++
Sbjct: 1 MAPVAVGDTLPDGQLGWFDGEDKLQQVSVHGLAAGKKVVLFGVPGAFTPTCSNQHVPGFI 60
Query: 321 QNADKMKSEGVSEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPNGAFIKALDLGTNLPP 500
A+++K++GV +I+ VSVNDP+VM AW + V+ LAD G + KAL L +L
Sbjct: 61 NQAEQLKAKGVDDILLVSVNDPFVMKAWAKSYPENKHVKFLADGLGTYTKALGLELDLSE 120
Query: 501 LG-GFRSKRFSMVINDSKVEELNVEPDG 581
G G RS+RF+++ ++ KV N+E G
Sbjct: 121 KGLGIRSRRFALLADNLKVTVANIEEGG 148
>02_01_0691 - 5167260-5167937
Length = 225
Score = 125 bits (302), Expect = 9e-29
Identities = 73/191 (38%), Positives = 108/191 (56%), Gaps = 8/191 (4%)
Frame = +3
Query: 69 SARGIVRGISTFNNGVYVRALHTSKIAMAPIKVGDMLPSLDLFEDSPAN----KVNTCEI 236
S+R + G+ R+ ++ +A I VGD LP L PA+ V E+
Sbjct: 33 SSRPLATGVRAAGARAARRSAASASTVVATIAVGDKLPDATLSYFDPADGELKTVTVAEL 92
Query: 237 TAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKMKSEGVSEIVCVSVNDPYVMAAWGAQH 416
TAG+K VLFAVPGAFTP CS+ HLPG+++ A ++ ++GV I CVSVND +VM AW
Sbjct: 93 TAGRKAVLFAVPGAFTPTCSQKHLPGFIEKAGELHAKGVDAIACVSVNDAFVMRAWKESL 152
Query: 417 NT-KGKVRMLADPNGAFIKALDLGTNL--PPLG-GFRSKRFSMVINDSKVEELNVEPDGT 584
V +L+D N +AL + +L P+G G RS+R++++ +D V+ LN+E G
Sbjct: 153 GLGDADVLLLSDGNLELTRALGVEMDLSDKPMGLGVRSRRYALLADDGVVKVLNLEEGGA 212
Query: 585 GLSCSLADKLK 617
+ S + LK
Sbjct: 213 FTTSSAEEMLK 223
>01_01_1148 -
9113728-9113835,9113952-9114035,9114831-9114992,
9115120-9115224,9115584-9116216,9117412-9117496,
9118426-9118520,9119083-9119241,9119968-9119997,
9120100-9120306
Length = 555
Score = 111 bits (268), Expect = 1e-24
Identities = 64/176 (36%), Positives = 99/176 (56%), Gaps = 4/176 (2%)
Frame = +3
Query: 57 AAGNSARGIVRGISTFNNGVYVRALHTSKIAMAPIKVGDMLPSLDLFEDSPANKVNTC-- 230
AA +AR RG+++ +G + ++ AP G L +++ A +T
Sbjct: 15 AAAAAARWASRGLASVGSGSDI-------VSAAP---GVSLQKARSWDEGVATNFSTTPL 64
Query: 231 -EITAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKMKSEGVSEIVCVSVNDPYVMAAWG 407
+I GKKVV+F +PGA+T CS+ H+P Y N DK+K++GV ++CVSVNDPY + W
Sbjct: 65 KDIFHGKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDPYALNGWA 124
Query: 408 AQHNTKGKVRMLADPNGAFIKALDLGTNL-PPLGGFRSKRFSMVINDSKVEELNVE 572
+ K + D +G+F K+LDL +L L G RS R+S ++D K++ NVE
Sbjct: 125 EKLQAKDAIEFYGDFDGSFHKSLDLEVDLSAALLGRRSHRWSAFVDDGKIKAFNVE 180
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 46.0 bits (104), Expect = 8e-05
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Frame = +3
Query: 138 SKIAMAPIKVGDMLPSLDLFEDSPANKVNTCEITAGKKVVLFAVPGAFTPGCSK--THLP 311
S +AM + +GD +P+L+L DS K+ + V+LF+ PG FTP C+ +
Sbjct: 32 SFVAMPGLTIGDTVPNLEL--DSTHGKIRIHDFVGDTYVILFSHPGDFTPVCTTELAAMA 89
Query: 312 GYVQNADK--MKSEGVSEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPNGAFIKALDL 482
GY + DK +K G+S V + ++ + + ++ADP+ IK L++
Sbjct: 90 GYAKEFDKRGVKLLGIS-CDDVQSHKDWIKDIEAYKPGNRVTYPIMADPSREAIKQLNM 147
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 31.1 bits (67), Expect = 2.6
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 498 PLGGFRSKRFSMVINDSKVEELNVEPDGTGLSCSLADKL 614
PL G S F+ +IN S ++ +V+ DGT SC + D +
Sbjct: 456 PLEGVGSAYFNELINRSMIQPADVQYDGTVQSCRVHDMI 494
>02_01_0390 -
2824585-2825307,2828206-2828460,2829006-2829107,
2829386-2829598,2829688-2829897
Length = 500
Score = 31.1 bits (67), Expect = 2.6
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = -1
Query: 479 VKSFDECAIWISKHSYLSLGVVLGTPSGHNIRIVHRHAYYFRNALTFHLISVLHV-SRQM 303
++ FD +++ + +G V+G P+G+++ HR AY A T++ ++ V SR M
Sbjct: 417 LQGFDSWYSAAAENPHDLVGAVVGGPNGNDVFTDHRGAYMQTEACTYNTAPMVGVFSRLM 476
Query: 302 SLRTPR 285
L R
Sbjct: 477 ELERRR 482
>06_01_0861 +
6527279-6527582,6527619-6527719,6527817-6528042,
6528132-6528475,6528624-6528989,6529080-6529347,
6529479-6529696
Length = 608
Score = 30.7 bits (66), Expect = 3.4
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +3
Query: 264 AVPGAFTPGCSKTHLPGYVQNADKMKSEGVSEIVCVSVNDPYVMAAW-GAQHNTKGKVRM 440
A+ G P C H+ + K +S+ V V + YV+A W G+ H++
Sbjct: 140 ALDGTHIPACVPMHMQDRFRGRKKFQSQNVLAAVDFDLRFLYVLAGWEGSAHDSYVLQDA 199
Query: 441 LADPNG 458
L+ NG
Sbjct: 200 LSRTNG 205
>02_02_0025 + 6183328-6186127,6186265-6186623
Length = 1052
Score = 29.9 bits (64), Expect = 5.9
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 631 NYFLTLSLSASEHDNPVPSGSTFNSSTLLSL 539
NY L+LS ++ D PVPS F +++ +SL
Sbjct: 632 NYLKDLNLSFNDFDGPVPSTGIFRNASRVSL 662
>11_06_0690 + 26303733-26306540
Length = 935
Score = 29.5 bits (63), Expect = 7.8
Identities = 24/90 (26%), Positives = 36/90 (40%)
Frame = +3
Query: 153 APIKVGDMLPSLDLFEDSPANKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGYVQNAD 332
+P + G + L SP V+ CE +A + AV GAFT + P +V A
Sbjct: 524 SPARRGAAVGKESLLPSSPVAVVSQCEDSAPETQSTLAVVGAFTRPVFWSPQPVFVPAAK 583
Query: 333 KMKSEGVSEIVCVSVNDPYVMAAWGAQHNT 422
E + P + A G+QH +
Sbjct: 584 DSPPESAA---ATEPPQPLLPATVGSQHES 610
>10_08_0906 -
21472490-21472732,21472947-21473271,21473351-21473598,
21473823-21474071
Length = 354
Score = 29.5 bits (63), Expect = 7.8
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Frame = +3
Query: 288 GCSKTHLPGYVQNADKMKSEGVSEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPNGAFI 467
G T+ P +Q+ M S++V +++ V G Q GK + PNGAFI
Sbjct: 208 GLRMTYYPPCLQSDKVMGISPHSDVVGLTLL-LQVNDVQGLQIKKDGKWLSVDAPNGAFI 266
Query: 468 KALDLGTNLPPL--GGFRSKRFSMVINDSK 551
+++G L L G FRS VIN +K
Sbjct: 267 --VNIGDTLEILSNGKFRSVEHRAVINPNK 294
>05_07_0328 +
29286109-29286120,29286982-29287146,29288427-29288589,
29288625-29288903,29289047-29289122,29289725-29289787,
29292116-29292164,29292413-29292504,29293017-29293068,
29293209-29293271,29293382-29293431,29293941-29294016,
29294444-29294656,29294763-29294869,29294966-29295074,
29295489-29295689,29295773-29296033,29296154-29296171,
29296287-29296397,29296755-29297030,29297108-29297382,
29297814-29298165,29298371-29298655,29298715-29299261,
29301658-29301781,29301871-29301946,29302062-29302136,
29302300-29302353,29302833-29302892,29302977-29303093,
29303228-29303361,29303480-29303682,29303879-29303976,
29304358-29304461,29304537-29304702,29304803-29304925,
29305047-29305129,29305217-29305358,29305523-29305549,
29305784-29305854,29305930-29306518
Length = 2046
Score = 29.5 bits (63), Expect = 7.8
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 429 KVRMLADPNGAFIKALDLGTNLPPLGGF 512
K+ + ADPNG++++ L+ NL P+ F
Sbjct: 526 KLNLQADPNGSYVEVLERYVNLGPIVDF 553
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,269,848
Number of Sequences: 37544
Number of extensions: 597380
Number of successful extensions: 1180
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5232550708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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