Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D03_e308_07.seq
         (1610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)         116   4e-26
SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.)              84   3e-16
SB_2302| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   1.5  
SB_13439| Best HMM Match : DnaJ (HMM E-Value=5.9e-24)                  32   1.5  
SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.4  
SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   6.0  

>SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)
          Length = 246

 Score =  116 bits (280), Expect = 4e-26
 Identities = 62/156 (39%), Positives = 94/156 (60%), Gaps = 3/156 (1%)
 Frame = +3

Query: 150 MAPIKVGDMLPSL--DLFEDSPANKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGYVQ 323
           M P + G  +P +   + E +   KV+T  + AGK VVLFA+PGAFTP CS THLP Y +
Sbjct: 1   MLPNREGQKVPKVVFPVREGNDWVKVSTDTLFAGKTVVLFALPGAFTPTCSSTHLPRYNE 60

Query: 324 NADKMKSEGVSEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPNGAFIKALDLGTNLPPL 503
            A   K++GV +I+C+SVND +VM +W A    +  +  + D NG F + + +  +   L
Sbjct: 61  LAPVFKAQGVDDIICLSVNDTFVMNSWAADQKAE-NITFIPDGNGEFSEGMGMLVDKSDL 119

Query: 504 G-GFRSKRFSMVINDSKVEELNVEPDGTGLSCSLAD 608
           G G RS R+SM++ D  +E++ +EPD  G    ++D
Sbjct: 120 GFGKRSWRYSMLVKDGVIEKMFIEPDVPGDPFKVSD 155


>SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 83.8 bits (198), Expect = 3e-16
 Identities = 42/94 (44%), Positives = 63/94 (67%), Gaps = 1/94 (1%)
 Frame = +3

Query: 336 MKSEGVSEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPNGAFIKALDLGTNLPP-LGGF 512
           +KS+GV  + C++VNDP+VM+AWG             + NG   KA+DL  +  P LG  
Sbjct: 53  IKSKGVDVVACIAVNDPFVMSAWG-------------EANGCQGKAVDLELDATPFLGNI 99

Query: 513 RSKRFSMVINDSKVEELNVEPDGTGLSCSLADKL 614
           RSKR++M++ D  V++L+VEPDGTGL+CSL++ +
Sbjct: 100 RSKRYAMLVEDGVVKQLHVEPDGTGLTCSLSNSI 133


>SB_2302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 31.9 bits (69), Expect = 1.5
 Identities = 24/72 (33%), Positives = 33/72 (45%)
 Frame = -1

Query: 437 SYLSLGVVLGTPSGHNIRIVHRHAYYFRNALTFHLISVLHVSRQMSLRTPRSKRSRYSKQ 258
           S+L  G+ L T  G  +R+ + H       L  H + +LH+ RQM   T     S+ S  
Sbjct: 165 SFLGAGIPLNTILGLPVRLNNIHGPKASYGLQPHDVRMLHLLRQMCSGT--LVASKGSST 222

Query: 257 DNFLPGGYLASI 222
             FLPG   A I
Sbjct: 223 VTFLPGDLQAGI 234


>SB_13439| Best HMM Match : DnaJ (HMM E-Value=5.9e-24)
          Length = 565

 Score = 31.9 bits (69), Expect = 1.5
 Identities = 24/72 (33%), Positives = 33/72 (45%)
 Frame = -1

Query: 437 SYLSLGVVLGTPSGHNIRIVHRHAYYFRNALTFHLISVLHVSRQMSLRTPRSKRSRYSKQ 258
           S+L  G+ L T  G  +R+ + H       L  H + +LH+ RQM   T     S+ S  
Sbjct: 312 SFLGAGIPLNTILGLPVRLNNIHGPKASYGLQPHDVRMLHLLRQMCSGT--LVASKGSST 369

Query: 257 DNFLPGGYLASI 222
             FLPG   A I
Sbjct: 370 VTFLPGDLQAGI 381


>SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2286

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 21/75 (28%), Positives = 38/75 (50%)
 Frame = -2

Query: 562  NSSTLLSLITIEKRFERNPPNGGRFVPRSRALMNAPFGSASIRTFPLVLCWAPQAAITYG 383
            N+ +L +L+T  KR + +PPN  +  P + AL++  F + + R+      WA      YG
Sbjct: 2114 NNWSLQALLTGIKRAKGSPPNQKQ--PITTALLHRIFATLNHRSSLDASFWAICLVAFYG 2171

Query: 382  SFTDTHTISETPSLF 338
             F  +H +  + + F
Sbjct: 2172 MFRKSHLLPTSATRF 2186


>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1021

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
 Frame = -2

Query: 607  SASEHDNPVPSGSTFNSSTLLS-------LITIEKRFERNPPNGGRFVPRSRALMNAPFG 449
            +AS+  NP  S  TFN S  +S       L      FE  PPN   F P   +  +    
Sbjct: 869  TASQVTNPYSSMGTFNQSPRVSEDSLHSPLDNTSSSFESGPPNKSPFQPGISSAYSGSSA 928

Query: 448  SASIRTFPLVLCWAPQAAITYGSFTDTHTISETP 347
            + S ++F +    AP+     G+       S TP
Sbjct: 929  AMSNKSFSVESLTAPRQPSDRGTPPHAMDPSVTP 962


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,369,519
Number of Sequences: 59808
Number of extensions: 638641
Number of successful extensions: 2024
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2021
length of database: 16,821,457
effective HSP length: 86
effective length of database: 11,677,969
effective search space used: 5255086050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)