Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_D03_e308_07.seq
         (1610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016448-16|AAM45377.1|  394|Caenorhabditis elegans Atg (autopha...    30   4.0  
AF016448-15|AAB65961.1|  412|Caenorhabditis elegans Atg (autopha...    30   4.0  

>AF016448-16|AAM45377.1|  394|Caenorhabditis elegans Atg (autophagy)
           related protein18, isoform b protein.
          Length = 394

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +3

Query: 201 DSPANKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKMKSEGVSE--IVCVS 374
           D+P NK+   ++T+     L A PG+   G    HL   + N   + +    E  I C+ 
Sbjct: 139 DTPTNKLGVLDLTSNPGNALIAYPGSTDTG--SVHLFDAI-NLSSVSTFNAHEGTIACLK 195

Query: 375 VNDPYVMAAWGAQHNTKGKV-RMLADPNG 458
            N    M A     +TKG V R+ + PNG
Sbjct: 196 FNQEGNMIATA---STKGTVIRVYSVPNG 221


>AF016448-15|AAB65961.1|  412|Caenorhabditis elegans Atg (autophagy)
           related protein18, isoform a protein.
          Length = 412

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +3

Query: 201 DSPANKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKMKSEGVSE--IVCVS 374
           D+P NK+   ++T+     L A PG+   G    HL   + N   + +    E  I C+ 
Sbjct: 139 DTPTNKLGVLDLTSNPGNALIAYPGSTDTG--SVHLFDAI-NLSSVSTFNAHEGTIACLK 195

Query: 375 VNDPYVMAAWGAQHNTKGKV-RMLADPNG 458
            N    M A     +TKG V R+ + PNG
Sbjct: 196 FNQEGNMIATA---STKGTVIRVYSVPNG 221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,434,245
Number of Sequences: 27780
Number of extensions: 502753
Number of successful extensions: 1096
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4680882998
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)